ISDA: 8RBY

Deposition Date 2023-12-05

Release Date 2024-12-11

Last Version Date 2024-12-11

Entry Detail

PDB ID:

8RBY

Keywords:

ANTIVIRAL PROTEIN

Title:

The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Camelus dromedarius (Taxon ID: 9838)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.90 Å

R-Value Free:

0.23

R-Value Work:

0.18

R-Value Observed:

0.18

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A
Chain Length:203
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:Camel-derived nanobody 1.26
Chain IDs:B
Chain Length:123
Number of Molecules:1
Biological Source:Camelus dromedarius

Ligand Molecules

MPO

NAG

Primary Citation

The crystal structure of the SARS-CoV-2 receptor binding domain in complex with the neutralizing nanobody 1.26

Casasnovas, J.M, Fernandez, L.A, Silva, K, Casasnovas, J.M, Margolles, Y, Noriega, M.A, Guzman, M, Arranz, R, Melero, R, Casanova, M, Corbera, J.A, Jimenez-de-Oya, N, Gastaminza, P, Garaigorta, U, Saiz, J.C, Martin-Acebes, M.A, Fernandez, L.A.Show

To Be Published ? ? ? (?)

Primary Citation of related structures