8R83 image
Deposition Date 2023-11-28
Release Date 2024-11-06
Last Version Date 2024-11-27
Entry Detail
PDB ID:
8R83
Keywords:
Title:
pentameric IgMFc-AIM complex global refinement
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ig-like domain-containing protein
Chain IDs:B, C, D, E (auth: L), F (auth: K), G (auth: H), H (auth: G), I (auth: E), J (auth: F), K (auth: A)
Chain Length:361
Number of Molecules:10
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Immunoglobulin J chain
Gene (Uniprot):JCHAIN
Chain IDs:L (auth: J)
Chain Length:169
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:CD5 antigen-like
Gene (Uniprot):CD5L
Chain IDs:A (auth: N)
Chain Length:328
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Cryo-EM reveals structural basis for human AIM/CD5L recognition of polymeric immunoglobulin M.
Nat Commun 15 9387 9387 (2024)
PMID: 39477921 DOI: 10.1038/s41467-024-53615-5

Abstact

Cell surface scavenger receptors contribute to homoeostasis and the response to pathogens and products associated with damage by binding to common molecular features on a wide range of targets. Apoptosis inhibitor of macrophage (AIM/CD5L) is a soluble protein belonging to the scavenger receptor cysteine-rich (SRCR) superfamily that contributes to prevention of a wide range of diseases associated with infection, inflammation, and cancer. AIM forms complexes with IgM pentamers which helps maintain high-levels of circulating AIM in serum for subsequent activation on release from the complex. The structural basis for AIM recognition of IgM as well as other binding targets is unknown. Here we apply cryogenic electron microscopy imaging (cryo-EM) to show how interfaces on both of AIM's C-terminal SRCR domains interact with the Fcμ constant region and J chain components of the IgM core. Both SRCR interfaces are also shown to contribute interactions important for AIM binding to damage-associated molecular patterns (DAMPs).

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Primary Citation of related structures