8R6Q image
Entry Detail
PDB ID:
8R6Q
Keywords:
Title:
Co-crystal structure of PD-L1 with low molecular weight inhibitor
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-22
Release Date:
2024-01-17
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.28
R-Value Work:
0.27
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 1 ligand 1
Chain IDs:A, B
Chain Length:128
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Solubilizer Tag Effect on PD-L1/Inhibitor Binding Properties for m -Terphenyl Derivatives.
Acs Med.Chem.Lett. 15 36 44 (2024)
PMID: 38229762 DOI: 10.1021/acsmedchemlett.3c00306

Abstact

Although heavily studied, the subject of anti-PD-L1 small-molecule inhibitors is still elusive. Here we present a systematic overview of the principles behind successful anti-PD-L1 small-molecule inhibitor design on the example of the m-terphenyl scaffold, with a particular focus on the neglected influence of the solubilizer tag on the overall affinity toward PD-L1. The inhibitor developed according to the proposed guidelines was characterized through its potency in blocking PD-1/PD-L1 complex formation in homogeneous time-resolved fluorescence and cell-based assays. The affinity is also explained based on the crystal structure of the inhibitor itself and its costructure with PD-L1 as well as a molecular modeling study. Our results structuralize the knowledge related to the strong pharmacophore feature of the m-terphenyl scaffold preferential geometry and the more complex role of the solubilizer tag in PD-L1 homodimer stabilization.

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