8R6N image
Deposition Date 2023-11-22
Release Date 2024-10-30
Last Version Date 2025-03-26
Entry Detail
PDB ID:
8R6N
Keywords:
Title:
Crystal structure of Candida glabrata Bdf1 bromodomain 2 bound to a pyridoindole ligand
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.11 Å
R-Value Free:
0.28
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Candida glabrata strain CBS138 chromosome C complete sequence
Gene (Uniprot):CAGL0C02541g
Chain IDs:A
Chain Length:118
Number of Molecules:1
Biological Source:Nakaseomyces glabratus
Ligand Molecules
Primary Citation
Humanized Candida and NanoBiT Assays Expedite Discovery of Bdf1 Bromodomain Inhibitors With Antifungal Potential.
Adv Sci 12 e2404260 e2404260 (2025)
PMID: 39821709 DOI: 10.1002/advs.202404260

Abstact

The fungal Bromodomain and Extra-Terminal (BET) protein Bdf1 is a potential antifungal target against invasive fungal infections. However, the need to selectively inhibit both Bdf1 bromodomains (BDs) over human orthologs and the lack of molecular tools to assess on-target antifungal efficacy hamper efforts to develop Bdf1 BD inhibitors as antifungal therapeutics. This study reports a phenyltriazine compound that inhibits both Bdf1 BDs from the human fungal pathogen Candida glabrata with selectivity over the orthologous BDs from the human BET protein Brd4. On-target antifungal activity is established by devising two yeast-based inhibition assays: a growth assay using humanized Candida strains in which the Bdf1 BDs are replaced by their Brd4 counterparts, and a NanoBiT assay that evaluates the BD-mediated association of Bdf1 with chromatin. These assays additionally enable the discovery that BET inhibitor I-BET726 targets both Bdf1 BDs, inhibits the growth of a broad spectrum of Candida species, including antifungal-resistant clinical isolates, and displays efficacy in an invertebrate animal model of infection. These collective findings highlight the promising potential of Bdf1 BD inhibitors as an innovative class of antifungal therapeutics and the pivotal role of yeast-based assay development toward achieving this end.

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Primary Citation of related structures