8R5M image
Entry Detail
PDB ID:
8R5M
Keywords:
Title:
E-selectin complexed with glycomimetic ligand DS0567
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-17
Release Date:
2024-10-23
Method Details:
Experimental Method:
Resolution:
2.49 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:E-selectin
Chain IDs:A
Chain Length:280
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Analogues of the pan-selectin antagonist rivipansel (GMI-1070).
Eur.J.Med.Chem. 272 116455 116455 (2024)
PMID: 38728868 DOI: 10.1016/j.ejmech.2024.116455

Abstact

The selectin family consisting of E-, P- and L-selectin plays dominant roles in atherosclerosis, ischemia-reperfusion injury, inflammatory diseases, and metastatic spreading of some cancers. An early goal in selectin-targeted drug discovery campaigns was to identify ligands binding to all three selectins, so-called pan-selectin antagonists. The physiological epitope, tetrasaccharide sialyl Lewisx (sLex, 1) binds to all selectins, albeit with very different affinities. Whereas P- and L-selectin require additional interactions contributed by sulfate groups for high binding affinity, E-selectin can functionally bind sLex-modified glycolipids and glycoproteins. Rivipansel (3) marked the first pan-selectin antagonist, which simultaneously interacted with both the sLex and the sulfate binding site. The aim of this contribution was to improve the pan-selectin affinity of rivipansel (3) by leveraging a new class of sLex mimetics in combination with an optimized linker length to the sulfate bearing group. As a result, the pan-selectin antagonist 11b exhibits an approximatively 5-fold improved affinity for E-, as well as P-selectin.

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Primary Citation of related structures