8R3G image
Entry Detail
PDB ID:
8R3G
EMDB ID:
Title:
Central glycolytic genes regulator (CggR) bound to DNA operator
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-11-09
Release Date:
2024-06-19
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Central glycolytic genes regulator
Chain IDs:A (auth: C), B (auth: A), E (auth: B), F (auth: D)
Chain Length:346
Number of Molecules:4
Biological Source:Bacillus subtilis
Polymer Type:polydeoxyribonucleotide
Description:operator DNA
Chain IDs:D (auth: E)
Chain Length:45
Number of Molecules:1
Biological Source:Bacillus subtilis
Polymer Type:polydeoxyribonucleotide
Description:operator DNA
Chain IDs:C (auth: F)
Chain Length:45
Number of Molecules:1
Biological Source:Bacillus subtilis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Ligand Molecules
Primary Citation
Structural characterization of two prototypical repressors of SorC family reveals tetrameric assemblies on DNA and mechanism of function.
Nucleic Acids Res. 52 7305 7320 (2024)
PMID: 38842936 DOI: 10.1093/nar/gkae434

Abstact

The SorC family of transcriptional regulators plays a crucial role in controlling the carbohydrate metabolism and quorum sensing. We employed an integrative approach combining X-ray crystallography and cryo-electron microscopy to investigate architecture and functional mechanism of two prototypical representatives of two sub-classes of the SorC family: DeoR and CggR from Bacillus subtilis. Despite possessing distinct DNA-binding domains, both proteins form similar tetrameric assemblies when bound to their respective DNA operators. Structural analysis elucidates the process by which the CggR-regulated gapA operon is derepressed through the action of two effectors: fructose-1,6-bisphosphate and newly confirmed dihydroxyacetone phosphate. Our findings provide the first comprehensive understanding of the DNA binding mechanism of the SorC-family proteins, shedding new light on their functional characteristics.

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Primary Citation of related structures