8R1A image
Entry Detail
PDB ID:
8R1A
EMDB ID:
Title:
Model of the membrane-bound GBP1 oligomer
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-11-01
Release Date:
2024-01-17
Method Details:
Experimental Method:
Resolution:
26.80 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Guanylate binding protein 1
Chain IDs:A, B, C, D, E, F
Chain Length:603
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Structural insights into the activation mechanism of antimicrobial GBP1.
Embo J. 43 615 636 (2024)
PMID: 38267655 DOI: 10.1038/s44318-023-00023-y

Abstact

The dynamin-related human guanylate-binding protein 1 (GBP1) mediates host defenses against microbial pathogens. Upon GTP binding and hydrolysis, auto-inhibited GBP1 monomers dimerize and assemble into soluble and membrane-bound oligomers, which are crucial for innate immune responses. How higher-order GBP1 oligomers are built from dimers, and how assembly is coordinated with nucleotide-dependent conformational changes, has remained elusive. Here, we present cryo-electron microscopy-based structural data of soluble and membrane-bound GBP1 oligomers, which show that GBP1 assembles in an outstretched dimeric conformation. We identify a surface-exposed helix in the large GTPase domain that contributes to the oligomerization interface, and we probe its nucleotide- and dimerization-dependent movements that facilitate the formation of an antimicrobial protein coat on a gram-negative bacterial pathogen. Our results reveal a sophisticated activation mechanism for GBP1, in which nucleotide-dependent structural changes coordinate dimerization, oligomerization, and membrane binding to allow encapsulation of pathogens within an antimicrobial protein coat.

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