8QX8 image
Deposition Date 2023-10-23
Release Date 2024-07-03
Last Version Date 2025-07-09
Entry Detail
PDB ID:
8QX8
Keywords:
Title:
Endosomal membrane tethering complex CORVET
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
4.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase PEP5
Gene (Uniprot):PEP5
Chain IDs:D (auth: A)
Chain Length:1029
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 16
Gene (Uniprot):VPS16
Chain IDs:C (auth: B)
Chain Length:798
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar membrane protein PEP3
Gene (Uniprot):PEP3
Chain IDs:F (auth: C)
Chain Length:918
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 33
Gene (Uniprot):VPS33
Chain IDs:B (auth: D)
Chain Length:691
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 3
Gene (Uniprot):VPS3
Chain IDs:E
Chain Length:1011
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Vacuolar protein sorting-associated protein 8
Gene (Uniprot):VPS8
Chain IDs:A (auth: F)
Chain Length:1298
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Structure of the endosomal CORVET tethering complex.
Nat Commun 15 5227 5227 (2024)
PMID: 38898033 DOI: 10.1038/s41467-024-49137-9

Abstact

Cells depend on their endolysosomal system for nutrient uptake and downregulation of plasma membrane proteins. These processes rely on endosomal maturation, which requires multiple membrane fusion steps. Early endosome fusion is promoted by the Rab5 GTPase and its effector, the hexameric CORVET tethering complex, which is homologous to the lysosomal HOPS. How these related complexes recognize their specific target membranes remains entirely elusive. Here, we solve the structure of CORVET by cryo-electron microscopy and revealed its minimal requirements for membrane tethering. As expected, the core of CORVET and HOPS resembles each other. However, the function-defining subunits show marked structural differences. Notably, we discover that unlike HOPS, CORVET depends not only on Rab5 but also on phosphatidylinositol-3-phosphate (PI3P) and membrane lipid packing defects for tethering, implying that an organelle-specific membrane code enables fusion. Our data suggest that both shape and membrane interactions of CORVET and HOPS are conserved in metazoans, thus providing a paradigm how tethering complexes function.

Legend

Protein

Chemical

Disease

Primary Citation of related structures