8QWA image
Entry Detail
PDB ID:
8QWA
Keywords:
Title:
Adenylosuccinate Synthetase from H. pylori in complex with PLP and IMP
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-10-19
Release Date:
2024-09-04
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.20
R-Value Work:
0.16
Space Group:
I 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Adenylosuccinate synthetase
Chain IDs:A
Chain Length:411
Number of Molecules:1
Biological Source:Helicobacter pylori 26695
Primary Citation
Vitamin B6 inhibits activity of Helicobacter pylori adenylosuccinate synthetase and growth of reference and clinical, antibiotic-resistant H. pylori strains.
J Enzyme Inhib Med Chem 39 2372734 2372734 (2024)
PMID: 39149761 DOI: 10.1080/14756366.2024.2372734

Abstact

The current therapies against gastric pathogen Helicobacter pylori are ineffective in over 20% of patients. Enzymes belonging to the purine salvage pathway are considered as novel drug targets in this pathogen. Therefore, the main aim of the current study was to determine the antibacterial activity of pyridoxal 5'-phosphate (PLP), an active form of vitamin B6, against reference and clinical strains of H. pylori. Using a broad set of microbiological, physicochemical (UV absorption, LC-MS, X-ray analysis) and in silico experiments, we were able to prove that PLP inhibits adenylosuccinate synthetase (AdSS) from H. pylori by the competition with GTP (IC50eq ∼30 nM). This behaviour was attributed to formation of a Schiff base with a lysine residue (a covalent bond with Lys322 in the GTP binding site of AdSS) and was potentiated by the presence of vitamin C. This antibacterial activity of PLP gives hope for its future use against H. pylori.

Legend

Protein

Chemical

Disease

Primary Citation of related structures