8QW8 image
Entry Detail
PDB ID:
8QW8
EMDB ID:
EMD-18682
Keywords:
TRANSCRIPTION
Title:
In condensate RNAPII elongation complex bound to RECQ5
Biological Source:
Source Organism:
Homo sapiens, synthetic construct, Bos taurus
Host Organism:
Escherichia coli
PDB Version:
Deposition Date:
2023-10-19
Release Date:
2025-04-30
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
7.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SUBTOMOGRAM AVERAGING
8QW8 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit
Chain IDs:A
Chain Length:1970
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:G3MZY8 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998, PF04992, PF04990, PF05001
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase subunit beta
Chain IDs:B
Chain Length:1174
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:A5PJW8 Pfam ID:PF04563, PF04561, PF04565, PF04566, PF04567, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB3
Chain IDs:C
Chain Length:275
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q3T0Q3 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Description:Polymerase (RNA) II (DNA directed) polypeptide D
Chain IDs:K (auth: D)
Chain Length:142
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q1JQ91 Pfam ID:PF03874
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC1
Chain IDs:D (auth: E)
Chain Length:210
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q2T9T3 Pfam ID:PF03871, PF01191
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC2
Chain IDs:E (auth: F)
Chain Length:127
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q32PE0 Pfam ID:PF01192
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB7
Chain IDs:L (auth: G)
Chain Length:172
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q5E9B8 Pfam ID:PF03876, PF00575
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC3
Chain IDs:F (auth: H)
Chain Length:150
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:F2Z4H3 Pfam ID:PF03870
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB9
Chain IDs:G (auth: I)
Chain Length:125
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q32P73 Pfam ID:PF02150, PF01096
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC5
Chain IDs:H (auth: J)
Chain Length:67
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q32P78 Pfam ID:PF01194
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerase II subunit RPB11
Chain IDs:I (auth: K)
Chain Length:117
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q32P79 Pfam ID:PF13656
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA-directed RNA polymerases I, II, and III subunit RPABC4
Chain IDs:J (auth: L)
Chain Length:58
Number of Molecules:1
Biological Source:Bos taurus
UniProt ID:Q3ZBC0 Pfam ID:PF03604
Polymer Type:polydeoxyribonucleotide
Description:DNA, DNA-RNA ELONGATION SCAFFOLD
Chain IDs:O (auth: N)
Chain Length:55
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polyribonucleotide
Description:RNA, DNA-RNA ELONGATION SCAFFOLD
Chain IDs:M (auth: P)
Chain Length:17
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Description:ATP-dependent DNA helicase Q5
Chain IDs:P (auth: R)
Chain Length:650
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O94762 Pfam ID:PF00270, PF00271, PF16124
Polymer Type:polydeoxyribonucleotide
Description:DNA, DNA-RNA ELONGATION SCAFFOLD
Chain IDs:N (auth: T)
Chain Length:51
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
MG
ZN
Primary Citation
Spatial organization of RNA polymerase II-RECQ5 transcriptional condensate
To Be Published ? ? ? (?)
Primary Citation of related structures
8QW8