8QV7 image
Entry Detail
PDB ID:
8QV7
Keywords:
Title:
Crystal structure of human TDO with alpha-methyl-L-tryptophan
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-10-17
Release Date:
2024-01-17
Method Details:
Experimental Method:
Resolution:
2.93 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tryptophan 2,3-dioxygenase
Chain IDs:A, B, C, D
Chain Length:355
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation

Abstact

Tryptophan-2,3-dioxygenase (TDO2) and indoleamine-2,3-dioxygenase (IDO1) are structurally distinct heme enzymes that catalyze the conversion of L-tryptophan to N-formyl-kynurenine, and play important roles in metabolism, inflammation, and tumor immune surveillance. The enzymes can adopt an inactive, heme-free (apo) state or an active, heme-containing (holo) state, with the balance between them varying dynamically according to biological conditions. Inhibitors of holo-TDO2 are known but, despite several advantages of the heme-free state as a drug target, no inhibitors of apo-TDO2 have been reported. We describe the discovery of the first apo-TDO2 binding inhibitors, to our knowledge, and their inhibition of cellular TDO2 activity at low nanomolar concentrations. The crystal structure of a potent, small molecule inhibitor bound to apo-TDO2 reveals its detailed binding interactions within the large, hydrophobic heme binding pocket of the active site.

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Primary Citation of related structures