8QV2 image
Deposition Date 2023-10-17
Release Date 2024-04-24
Last Version Date 2024-07-31
Entry Detail
PDB ID:
8QV2
Keywords:
Title:
Structure of the native y-Tubulin Ring Complex (yTuRC) capping microtubule minus ends at the spindle pole body
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
9.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SUBTOMOGRAM AVERAGING
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulin alpha-1 chain
Gene (Uniprot):TUB1
Chain IDs:CA (auth: Ad), DA (auth: Ac), GA (auth: Af), HA (auth: Ae), KA (auth: Ah), LA (auth: Ag), OA (auth: Aj), PA (auth: Ai), SA (auth: Al), TA (auth: Ak), WA (auth: An), XA (auth: Am), AB (auth: Ab), YB (auth: Ap), ZB (auth: Ao), CC (auth: Ar), DC (auth: Aq)
Chain Length:447
Number of Molecules:17
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Chain IDs:EA (auth: Bd), FA (auth: Bc), IA (auth: Bf), JA (auth: Be), MA (auth: Bh), NA (auth: Bg), QA (auth: Bj), RA (auth: Bi), UA (auth: Bl), VA (auth: Bk), YA (auth: Bn), ZA (auth: Bm), BB (auth: Bb), AC (auth: Bp), BC (auth: Bo), EC (auth: Br), FC (auth: Bq)
Chain Length:457
Number of Molecules:17
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Spindle pole body component
Chain IDs:N (auth: C), P (auth: E), R (auth: G), T (auth: I), V (auth: K), X (auth: M), Z (auth: O)
Chain Length:823
Number of Molecules:7
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Spindle pole body component
Chain IDs:O (auth: D), Q (auth: F), S (auth: H), U (auth: J), W (auth: L), Y (auth: N), AA (auth: P)
Chain Length:473
Number of Molecules:7
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Spindle pole body component 110
Chain IDs:CB (auth: Sc), DB (auth: Sd), EB (auth: Se), FB (auth: Sf), IB (auth: Sg), JB (auth: Sh), KB (auth: Si), LB (auth: Sj), OB (auth: Sk), PB (auth: Sl), SB (auth: Sa), TB (auth: Sb), WB (auth: Sm), XB (auth: Sn)
Chain Length:944
Number of Molecules:14
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Unkown protein
Chain IDs:GB (auth: Ue), HB (auth: Uf), MB (auth: Ui), NB (auth: Uj), QB (auth: Um), RB (auth: Un), UB (auth: Ua), VB (auth: Ub), GC (auth: Ug), HC (auth: Uh), IC (auth: Uk), JC (auth: Ul), KC (auth: Uc), LC (auth: Ud)
Chain Length:67
Number of Molecules:14
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Tubulin gamma chain
Chain IDs:A (auth: b), B (auth: c), C (auth: d), D (auth: e), E (auth: f), F (auth: g), G (auth: h), H (auth: i), I (auth: j), J (auth: k), K (auth: l), L (auth: m), M (auth: n), BA (auth: a)
Chain Length:473
Number of Molecules:14
Biological Source:Saccharomyces cerevisiae
Primary Citation
Structure of the native gamma-tubulin ring complex capping spindle microtubules.
Nat.Struct.Mol.Biol. 31 1134 1144 (2024)
PMID: 38609662 DOI: 10.1038/s41594-024-01281-y

Abstact

Microtubule (MT) filaments, composed of α/β-tubulin dimers, are fundamental to cellular architecture, function and organismal development. They are nucleated from MT organizing centers by the evolutionarily conserved γ-tubulin ring complex (γTuRC). However, the molecular mechanism of nucleation remains elusive. Here we used cryo-electron tomography to determine the structure of the native γTuRC capping the minus end of a MT in the context of enriched budding yeast spindles. In our structure, γTuRC presents a ring of γ-tubulin subunits to seed nucleation of exclusively 13-protofilament MTs, adopting an active closed conformation to function as a perfect geometric template for MT nucleation. Our cryo-electron tomography reconstruction revealed that a coiled-coil protein staples the first row of α/β-tubulin of the MT to alternating positions along the γ-tubulin ring of γTuRC. This positioning of α/β-tubulin onto γTuRC suggests a role for the coiled-coil protein in augmenting γTuRC-mediated MT nucleation. Based on our results, we describe a molecular model for budding yeast γTuRC activation and MT nucleation.

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