8QUP image
Deposition Date 2023-10-16
Release Date 2024-10-23
Last Version Date 2025-12-10
Entry Detail
PDB ID:
8QUP
Keywords:
Title:
G-CSFR inhibitor Bop1
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.30 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Bop1
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
A strategy to design protein-based antagonists against type I cytokine receptors.
Plos Biol. 22 e3002883 e3002883 (2024)
PMID: 39591631 DOI: 10.1371/journal.pbio.3002883

Abstact

Excessive cytokine signaling resulting from dysregulation of a cytokine or its receptor can be a main driver of cancer, autoimmune, or hematopoietic disorders. Here, we leverage protein design to create tailored cytokine receptor blockers with idealized properties. Specifically, we aimed to tackle the granulocyte-colony stimulating factor receptor (G-CSFR), a mediator of different types of leukemia and autoinflammatory diseases. By modifying designed G-CSFR binders, we engineered hyper-stable proteins that function as nanomolar signaling antagonists. X-ray crystallography showed atomic-level agreement with the experimental structure of an exemplary design. Furthermore, the most potent design blocks G-CSFR in acute myeloid leukemia cells and primary human hematopoietic stem cells. Thus, the resulting designs can be used for inhibiting or homing to G-CSFR-expressing cells. Our results also demonstrate that similarly designed cytokine mimics can be used to derive antagonists to tackle other type I cytokine receptors.

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Chemical

Disease

Primary Citation of related structures
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