8QUI image
Entry Detail
PDB ID:
8QUI
Keywords:
Title:
Hexameric HIV-1 CA in complex with DDD00024969
Biological Source:
PDB Version:
Deposition Date:
2023-10-16
Release Date:
2024-03-27
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 6
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spacer peptide 1
Chain IDs:A
Chain Length:231
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Ligand Molecules
Primary Citation
Application of an NMR/Crystallography Fragment Screening Platform for the Assessment and Rapid Discovery of New HIV-CA Binding Fragments.
Chemmedchem 19 e202400025 e202400025 (2024)
PMID: 38581280 DOI: 10.1002/cmdc.202400025

Abstact

Identification and assessment of novel targets is essential to combat drug resistance in the treatment of HIV/AIDS. HIV Capsid (HIV-CA), the protein playing a major role in both the early and late stages of the viral life cycle, has emerged as an important target. We have applied an NMR fragment screening platform and identified molecules that bind to the N-terminal domain (NTD) of HIV-CA at a site close to the interface with the C-terminal domain (CTD). Using X-ray crystallography, we have been able to obtain crystal structures to identify the binding mode of these compounds. This allowed for rapid progression of the initial, weak binding, fragment starting points to compounds 37 and 38, which have 19F-pKi values of 5.3 and 5.4 respectively.

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Primary Citation of related structures