8QTD image
Entry Detail
PDB ID:
8QTD
EMDB ID:
Keywords:
Title:
Local refinement of SARS-CoV-2 BA.2.86 Spike and XBB-7 Fab
Biological Source:
PDB Version:
Deposition Date:
2023-10-12
Release Date:
2024-05-08
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Spike glycoprotein,Fibritin
Chain IDs:A
Chain Length:1284
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
Polymer Type:polypeptide(L)
Description:XBB-7 fab heavy chain
Chain IDs:B (auth: H)
Chain Length:131
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:XBB-7 fab light chain
Chain IDs:C (auth: L)
Chain Length:100
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

BA.2.86, a recently described sublineage of SARS-CoV-2 Omicron, contains many mutations in the spike gene. It appears to have originated from BA.2 and is distinct from the XBB variants responsible for many infections in 2023. The global spread and plethora of mutations in BA.2.86 has caused concern that it may possess greater immune-evasive potential, leading to a new wave of infection. Here, we examine the ability of BA.2.86 to evade the antibody response to infection using a panel of vaccinated or naturally infected sera and find that it shows marginally less immune evasion than XBB.1.5. We locate BA.2.86 in the antigenic landscape of recent variants and look at its ability to escape panels of potent monoclonal antibodies generated against contemporary SARS-CoV-2 infections. We demonstrate, and provide a structural explanation for, increased affinity of BA.2.86 to ACE2, which may increase transmissibility.

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Disease

Primary Citation of related structures