8QRX image
Entry Detail
PDB ID:
8QRX
Title:
Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase in its substrate-loaded state
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-10-09
Release Date:
2024-06-26
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:TomAPCP substrate-loaded from the Tomaymycin non-ribosomal peptide synthetase
Chain IDs:A
Chain Length:92
Number of Molecules:1
Biological Source:Streptomyces regensis
Ligand Molecules
Primary Citation
The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv 10 eadm9404 eadm9404 (2024)
PMID: 38896613 DOI: 10.1126/sciadv.adm9404

Abstact

In the quest for new bioactive substances, nonribosomal peptide synthetases (NRPS) provide biodiversity by synthesizing nonproteinaceous peptides with high cellular activity. NRPS machinery consists of multiple modules, each catalyzing a unique series of chemical reactions. Incomplete understanding of the biophysical principles orchestrating these reaction arrays limits the exploitation of NRPSs in synthetic biology. Here, we use nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry to solve the conundrum of how intermodular recognition is coupled with loaded carrier protein specificity in the tomaymycin NRPS. We discover an adaptor domain that directly recruits the loaded carrier protein from the initiation module to the elongation module and reveal its mechanism of action. The adaptor domain of the type found here has specificity rules that could potentially be exploited in the design of engineered NRPS machinery.

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Primary Citation of related structures