8QOD image
Deposition Date 2023-09-28
Release Date 2024-10-09
Last Version Date 2024-10-09
Entry Detail
PDB ID:
8QOD
Keywords:
BLOOD CLOTTING
Title:
CRYSTAL STRUCTURE OF FVIIA IN COMPLEX WITH A BENZAMIDINE-BASED INHIBITOR
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Cricetinae
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.57 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
8QOD validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Factor VII light chain
Gene (Uniprot):F7
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P08709 Pfam ID:PF00594, PF00008, PF14670, PF00089 EC:3.4.21.21
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coagulation factor VII
Gene (Uniprot):F7
Chain IDs:B
Chain Length:254
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P08709 Pfam ID:PF00594, PF00008, PF14670, PF00089 EC:3.4.21.21
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tissue factor
Gene (Uniprot):F3
Chain IDs:C
Chain Length:243
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P13726 Pfam ID:PF01108, PF09294
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CGU A GLU modified residue
Ligand Molecules
CA
CL
FUC
GLC
MG
WIZ
Primary Citation
Crystallography and molecular simulations capture S1 pocket collapse in allosteric regulation of factor VIIa and other serine proteases.
To be published ? ? ? (?)
Primary Citation of related structures
8QOD