8QNB image
Entry Detail
PDB ID:
8QNB
Keywords:
Title:
Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase: in complex with L-galactono-1,4-lactone
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-09-26
Release Date:
2024-05-01
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:L-galactono-1,4-lactone dehydrogenase
Chain IDs:A
Chain Length:511
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
Structure, mechanism, and evolution of the last step in vitamin C biosynthesis.
Nat Commun 15 4158 4158 (2024)
PMID: 38755143 DOI: 10.1038/s41467-024-48410-1

Abstact

Photosynthetic organisms, fungi, and animals comprise distinct pathways for vitamin C biosynthesis. Besides this diversity, the final biosynthetic step consistently involves an oxidation reaction carried out by the aldonolactone oxidoreductases. Here, we study the origin and evolution of the diversified activities and substrate preferences featured by these flavoenzymes using molecular phylogeny, kinetics, mutagenesis, and crystallographic experiments. We find clear evidence that they share a common ancestor. A flavin-interacting amino acid modulates the reactivity with the electron acceptors, including oxygen, and determines whether an enzyme functions as an oxidase or a dehydrogenase. We show that a few side chains in the catalytic cavity impart the reaction stereoselectivity. Ancestral sequence reconstruction outlines how these critical positions were affixed to specific amino acids along the evolution of the major eukaryotic clades. During Eukarya evolution, the aldonolactone oxidoreductases adapted to the varying metabolic demands while retaining their overarching vitamin C-generating function.

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