8QLD image
Deposition Date 2023-09-19
Release Date 2024-01-17
Last Version Date 2024-01-31
Entry Detail
PDB ID:
8QLD
Keywords:
Title:
Bacteriophage T5 dUTPase mutant with loop deletion (30-35 aa)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 65
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Deoxyuridine 5'-triphosphate nucleotidohydrolase
Gene (Uniprot):DUT
Mutagens:deleted G30, T31, P33, A34, A35
Chain IDs:A, B, C
Chain Length:143
Number of Molecules:3
Biological Source:Escherichia phage T5
Primary Citation
Bacteriophage T5 dUTPase: Combination of Common Enzymatic and Novel Functions.
Int J Mol Sci 25 ? ? (2024)
PMID: 38255966 DOI: 10.3390/ijms25020892

Abstact

The main function of dUTPases is to regulate the cellular levels of dUTP and dTTP, thereby playing a crucial role in DNA repair mechanisms. Despite the fact that mutant organisms with obliterated dUTPase enzymatic activity remain viable, it is not possible to completely knock out the dut gene due to the lethal consequences of such a mutation for the organism. As a result, it is considered that this class of enzymes performs an additional function that is essential for the organism's survival. In this study, we provide evidence that the dUTPase of bacteriophage T5 fulfills a supplemental function, in addition to its canonical role. We determined the crystal structure of bacteriophage T5 dUTPase with a resolution of 2.0 Å, and we discovered a distinct short loop consisting of six amino acid residues, representing a unique structural feature specific to the T5-like phages dUTPases. The removal of this element did not affect the overall structure of the homotrimer, but it had significant effects on the development of the phage. Furthermore, it was shown that the enzymatic function and the novel function of the bacteriophage T5 dUTPase are unrelated and independent from each other.

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Primary Citation of related structures
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