8QI2 image
Entry Detail
PDB ID:
8QI2
EMDB ID:
Title:
370A Vipp1 H1-6 helical tubes
Biological Source:
PDB Version:
Deposition Date:
2023-09-11
Release Date:
2024-09-18
Method Details:
Experimental Method:
Resolution:
6.70 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Membrane-associated protein Vipp1
Chain IDs:A (auth: D)
Chain Length:192
Number of Molecules:1
Biological Source:Synechocystis sp. PCC 6803
Ligand Molecules
Primary Citation
Structural basis for Vipp1 membrane binding: from loose coats and carpets to ring and rod assemblies.
Nat.Struct.Mol.Biol. 32 555 570 (2025)
PMID: 39379528 DOI: 10.1038/s41594-024-01399-z

Abstact

Vesicle-inducing protein in plastids 1 (Vipp1) is critical for thylakoid membrane biogenesis and maintenance. Although Vipp1 has recently been identified as a member of the endosomal sorting complexes required for transport III superfamily, it is still unknown how Vipp1 remodels membranes. Here, we present cryo-electron microscopy structures of Synechocystis Vipp1 interacting with membranes: seven structures of helical and stacked-ring assemblies at 5-7-Å resolution engulfing membranes and three carpet structures covering lipid vesicles at ~20-Å resolution using subtomogram averaging. By analyzing ten structures of N-terminally truncated Vipp1, we show that helix α0 is essential for membrane tubulation and forms the membrane-anchoring domain of Vipp1. Lastly, using a conformation-restrained Vipp1 mutant, we reduced the structural plasticity of Vipp1 and determined two structures of Vipp1 at 3.0-Å resolution, resolving the molecular details of membrane-anchoring and intersubunit contacts of helix α0. Our data reveal membrane curvature-dependent structural transitions from carpets to rings and rods, some of which are capable of inducing and/or stabilizing high local membrane curvature triggering membrane fusion.

Legend

Protein

Chemical

Disease

Primary Citation of related structures