8QEM image
Deposition Date 2023-08-31
Release Date 2024-09-11
Last Version Date 2026-01-21
Entry Detail
PDB ID:
8QEM
Keywords:
Title:
Neck channel of phage 812 after tail contraction (C1)
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative neck protein
Gene (Uniprot):812_096, 812_098, 812a_098, 812F1_098, K1/420_098, K1_098
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:302
Number of Molecules:12
Biological Source:Staphylococcus phage 812
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Portal protein
Gene (Uniprot):812_091, 812_093, 812a_093, 812F1_093, K1/420_093, K1_093
Chain IDs:M, N, O, P, Q, R, S, T, U, V, W, X
Chain Length:563
Number of Molecules:12
Biological Source:Staphylococcus phage 812
Polymer Type:polydeoxyribonucleotide
Molecule:Channel DNA forward strand (63-MER)
Chain IDs:Z (auth: Y)
Chain Length:63
Number of Molecules:1
Biological Source:Staphylococcus phage 812
Polymer Type:polydeoxyribonucleotide
Molecule:Channel DNA reverse strand (63-MER)
Chain IDs:Y (auth: Z)
Chain Length:63
Number of Molecules:1
Biological Source:Staphylococcus phage 812
Ligand Molecules
Primary Citation
Genome anchoring, retention, and release by neck proteins of Staphylococcus phage 812.
Commun Biol ? ? ? (2026)
PMID: 41507424 DOI: 10.1038/s42003-025-09477-8

Abstact

The virion of Staphylococcus phage 812 is formed by a capsid and a contractile tail joined together by neck proteins. The neck proteins are crucial for virion assembly, DNA packaging, and the regulation of genome release, but their functions are not completely understood. Here, we show that the neck of phage 812 consists of portal, adaptor, stopper, tail terminator, and two types of decoration proteins. A dodecameric DNA-binding site at the surface of the portal complex anchors the phage genome inside the capsid. The adaptor complex induces a local B-to-A form transition of the DNA in the neck channel that could slow or pause genome translocation during ejection. The central channel of a stopper complex that is not attached to the tail terminator complex is closed by gating loops. In contrast, in the phage 812 virion, the gating loops are in an open conformation, and the DNA extends into the tail. The structure of neck proteins is not affected by tail sheath contraction. Therefore, the expulsion of tail tape measure proteins triggers the genome release.

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Chemical

Disease

Primary Citation of related structures
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