8QDH image
Entry Detail
PDB ID:
8QDH
Keywords:
Title:
Engineered LmrR carrying a cyclic boronate ester formed between Tris and p-boronophenylalanine at position 89
Biological Source:
PDB Version:
Deposition Date:
2023-08-29
Release Date:
2024-05-01
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.26
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Transcriptional regulator, PadR-like family
Mutations:M8H, A92L, F93E, M89 replaced with p-boronophenylalanine
Chain IDs:A, B
Chain Length:131
Number of Molecules:2
Biological Source:Lactococcus cremoris subsp. cremoris MG1363
Ligand Molecules
Primary Citation
Boron catalysis in a designer enzyme.
Nature 629 824 829 (2024)
PMID: 38720081 DOI: 10.1038/s41586-024-07391-3

Abstact

Enzymes play an increasingly important role in improving the benignity and efficiency of chemical production, yet the diversity of their applications lags heavily behind chemical catalysts as a result of the relatively narrow range of reaction mechanisms of enzymes. The creation of enzymes containing non-biological functionalities facilitates reaction mechanisms outside nature's canon and paves the way towards fully programmable biocatalysis1-3. Here we present a completely genetically encoded boronic-acid-containing designer enzyme with organocatalytic reactivity not achievable with natural or engineered biocatalysts4,5. This boron enzyme catalyses the kinetic resolution of hydroxyketones by oxime formation, in which crucial interactions with the protein scaffold assist in the catalysis. A directed evolution campaign led to a variant with natural-enzyme-like enantioselectivities for several different substrates. The unique activation mode of the boron enzyme was confirmed using X-ray crystallography, high-resolution mass spectrometry (HRMS) and 11B NMR spectroscopy. Our study demonstrates that genetic-code expansion can be used to create evolvable enantioselective enzymes that rely on xenobiotic catalytic moieties such as boronic acids and access reaction mechanisms not reachable through catalytic promiscuity of natural or engineered enzymes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures