8QDB image
Entry Detail
PDB ID:
8QDB
Keywords:
Title:
Wdyg1p Ser256DHA (PSF)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-08-28
Release Date:
2024-03-13
Method Details:
Experimental Method:
Resolution:
1.85 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Yellowish-green 1-like protein
Chain IDs:A, B
Chain Length:431
Number of Molecules:2
Biological Source:Exophiala dermatitidis
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
DHA A SER modified residue
Ligand Molecules
Primary Citation
Polyketide Trimming Shapes Dihydroxynaphthalene-Melanin and Anthraquinone Pigments.
Adv Sci 11 e2400184 e2400184 (2024)
PMID: 38491909 DOI: 10.1002/advs.202400184

Abstact

Pigments such as anthraquinones (AQs) and melanins are antioxidants, protectants, or virulence factors. AQs from the entomopathogenic bacterium Photorhabdus laumondii are produced by a modular type II polyketide synthase system. A key enzyme involved in AQ biosynthesis is PlAntI, which catalyzes the hydrolysis of the bicyclic-intermediate-loaded acyl carrier protein, polyketide trimming, and assembly of the aromatic AQ scaffold. Here, multiple crystal structures of PlAntI in various conformations and with bound substrate surrogates or inhibitors are reported. Structure-based mutagenesis and activity assays provide experimental insights into the three sequential reaction steps to yield the natural product AQ-256. For comparison, a series of ligand-complex structures of two functionally related hydrolases involved in the biosynthesis of 1,8-dihydroxynaphthalene-melanin in pathogenic fungi is determined. These data provide fundamental insights into the mechanism of polyketide trimming that shapes pigments in pro- and eukaryotes.

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Disease

Primary Citation of related structures