8QC8 image
Entry Detail
PDB ID:
8QC8
Keywords:
Title:
Crystal structure of NAD-dependent glycoside hydrolase from Flavobacterium sp. (strain K172) in complex with co-factor NAD+
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2023-08-25
Release Date:
2023-12-27
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Gfo/Idh/MocA family oxidoreductase
Chain IDs:A (auth: B), B (auth: C), C (auth: D), D (auth: A)
Chain Length:393
Number of Molecules:4
Biological Source:Paenarthrobacter ureafaciens
Primary Citation
Widespread Family of NAD + -Dependent Sulfoquinovosidases at the Gateway to Sulfoquinovose Catabolism.
J.Am.Chem.Soc. 145 28216 28223 (2023)
PMID: 38100472 DOI: 10.1021/jacs.3c11126

Abstact

The sulfosugar sulfoquinovose (SQ) is produced by photosynthetic plants, algae, and cyanobacteria on a scale of 10 billion tons per annum. Its degradation, which is essential to allow cycling of its constituent carbon and sulfur, involves specialized glycosidases termed sulfoquinovosidases (SQases), which release SQ from sulfolipid glycoconjugates, so SQ can enter catabolism pathways. However, many SQ catabolic gene clusters lack a gene encoding a classical SQase. Here, we report the discovery of a new family of SQases that use an atypical oxidoreductive mechanism involving NAD+ as a catalytic cofactor. Three-dimensional X-ray structures of complexes with SQ and NAD+ provide insight into the catalytic mechanism, which involves transient oxidation at C3. Bioinformatic survey reveals this new family of NAD+-dependent SQases occurs within sulfoglycolytic and sulfolytic gene clusters that lack classical SQases and is distributed widely including within Roseobacter clade bacteria, suggesting an important contribution to marine sulfur cycling.

Legend

Protein

Chemical

Disease

Primary Citation of related structures