8Q87 image
Deposition Date 2023-08-18
Release Date 2024-08-28
Last Version Date 2025-03-12
Entry Detail
PDB ID:
8Q87
Keywords:
RIBOSOME
Title:
Structure of the G. gallus 80S rotated ribosome in complex with eEF2 and SERBP1
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8Q87 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongation factor 2
Gene (Uniprot):EEF2
Chain IDs:DC (auth: A)
Chain Length:858
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q90705 Pfam ID:PF00009, PF03144, PF14492, PF03764, PF00679
Polymer Type:polyribonucleotide
Molecule:18S rRNA
Chain IDs:TA (auth: A2)
Chain Length:1823
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):RPS27L
Chain IDs:VA (auth: AA)
Chain Length:84
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A3Q2TV39 Pfam ID:PF01667
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28
Gene (Uniprot):RPS28
Chain IDs:WA (auth: AB)
Chain Length:264
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A3Q2U825 Pfam ID:PF01200
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):RPS27A
Chain IDs:YA (auth: AC)
Chain Length:243
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P79781 Pfam ID:PF00240, PF01599
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eS30
Chain IDs:BB (auth: AD)
Chain Length:133
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):RCJMB04_2p17
Chain IDs:CB (auth: AE)
Chain Length:115
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZM66 Pfam ID:PF01283
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein RACK1
Gene (Uniprot):RACK1
Chain IDs:FB (auth: AF)
Chain Length:249
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P63247 Pfam ID:PF00400
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Gene (Uniprot):RPS29
Chain IDs:HB (auth: AG)
Chain Length:194
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V0Z8V3 Pfam ID:PF00253
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS2
Gene (Uniprot):RPSA
Chain IDs:ZB (auth: AZ)
Chain Length:296
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P50890 Pfam ID:PF00318, PF16122
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eS1
Chain IDs:UA (auth: Aa)
Chain Length:84
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Gene (Uniprot):RPS2
Chain IDs:XA (auth: Ab)
Chain Length:264
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V0Z891 Pfam ID:PF00333, PF03719
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-(apurinic or apyrimidinic site) lyase
Gene (Uniprot):RPS3
Chain IDs:ZA (auth: Ac)
Chain Length:243
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NPA9 Pfam ID:PF07650, PF00189
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS4
Gene (Uniprot):RPS4
Chain IDs:AB (auth: Ad)
Chain Length:133
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P47836 Pfam ID:PF08071, PF00900, PF00467, PF16121
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):RPS5
Chain IDs:DB (auth: Ae)
Chain Length:115
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:G1TFM5 Pfam ID:PF00177
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS6
Gene (Uniprot):RPS6
Chain IDs:EB (auth: Af)
Chain Length:249
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P47838 Pfam ID:PF01092
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:GB (auth: Ag)
Chain Length:194
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NN16 Pfam ID:PF01251
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8
Chain IDs:IB (auth: Ah)
Chain Length:207
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NB02 Pfam ID:PF01201
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):RPS9
Chain IDs:JB (auth: Ai)
Chain Length:194
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S10
Gene (Uniprot):RPS10
Chain IDs:KB (auth: Aj)
Chain Length:165
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:E1C4N0 Pfam ID:PF03501
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11
Gene (Uniprot):cRPS11
Chain IDs:LB (auth: Ak)
Chain Length:158
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TH5 Pfam ID:PF16205, PF00366
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS12
Gene (Uniprot):RPS12
Chain IDs:MB (auth: Al)
Chain Length:132
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P84175 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS15
Gene (Uniprot):RPS13
Chain IDs:NB (auth: Am)
Chain Length:151
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q6ITC7 Pfam ID:PF08069, PF00312
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S14
Gene (Uniprot):RPS14
Chain IDs:OB (auth: An)
Chain Length:151
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZHW8 Pfam ID:PF00411
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS19
Gene (Uniprot):RPS15
Chain IDs:PB (auth: Ao)
Chain Length:145
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P62846 Pfam ID:PF00203
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S16
Gene (Uniprot):RPS16
Chain IDs:AC (auth: Ap)
Chain Length:146
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:R4GGJ0 Pfam ID:PF00380
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS17
Gene (Uniprot):RPS17
Chain IDs:QB (auth: Aq)
Chain Length:135
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P08636 Pfam ID:PF00833
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):RPS18
Chain IDs:RB (auth: Ar)
Chain Length:152
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:G1TPG3 Pfam ID:PF00416
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eS19
Chain IDs:SB (auth: As)
Chain Length:145
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S20
Gene (Uniprot):RPS20
Chain IDs:TB (auth: At)
Chain Length:119
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NH93 Pfam ID:PF00338
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein eS21
Chain IDs:UB (auth: Au)
Chain Length:83
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15a
Gene (Uniprot):RPS15A
Chain IDs:VB (auth: Av)
Chain Length:130
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A3Q3A7P6 Pfam ID:PF00410
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uS12
Chain IDs:WB (auth: Aw)
Chain Length:143
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):RPS24
Chain IDs:XB (auth: Ax)
Chain Length:131
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NF89 Pfam ID:PF01282
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):SLC37A4
Chain IDs:YB (auth: Ay)
Chain Length:125
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V1A7V4 Pfam ID:PF03297
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):RPL41
Chain IDs:D (auth: Az)
Chain Length:296
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A087WNH4 Pfam ID:PF05162
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:A (auth: B5)
Chain Length:4441
Number of Molecules:1
Biological Source:Gallus gallus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:C (auth: B7)
Chain Length:119
Number of Molecules:1
Biological Source:Gallus gallus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:B (auth: B8)
Chain Length:157
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):RPL8
Chain IDs:E (auth: BA)
Chain Length:257
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NIX0 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL3
Gene (Uniprot):RCJMB04_14e22
Chain IDs:F (auth: BB)
Chain Length:71
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZJZ2 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4 C-terminal domain-containing protein
Gene (Uniprot):RCJMB04_25p23
Chain IDs:G (auth: BC)
Chain Length:115
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZII1 Pfam ID:PF00573, PF14374
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL18
Gene (Uniprot):RPL5
Chain IDs:H (auth: BD)
Chain Length:297
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P22451 Pfam ID:PF17144, PF14204
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Chain IDs:I (auth: BE)
Chain Length:298
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q8UWG7 Pfam ID:PF03868, PF01159
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30
Gene (Uniprot):RPL7
Chain IDs:J (auth: BF)
Chain Length:110
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZJ56 Pfam ID:PF08079, PF00327
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL8
Gene (Uniprot):RPL7A
Chain IDs:K (auth: BG)
Chain Length:117
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P32429 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9
Gene (Uniprot):RPL9
Chain IDs:L (auth: BH)
Chain Length:123
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1D5NVI1 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16,Large ribosomal subunit protein uL16
Gene (Uniprot):RPL10
Chain IDs:M (auth: BI)
Chain Length:214
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q08200 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:N (auth: BJ)
Chain Length:178
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1D5P3B1 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL13
Gene (Uniprot):RPL13
Chain IDs:O (auth: BL)
Chain Length:211
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P41125 Pfam ID:PF01294
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14
Gene (Uniprot):RPL14
Chain IDs:P (auth: BM)
Chain Length:131
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TF9 Pfam ID:PF01929
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):RPL15
Chain IDs:Q (auth: BN)
Chain Length:204
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F1NQG5 Pfam ID:PF00827
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL13
Chain IDs:R (auth: BO)
Chain Length:105
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22
Gene (Uniprot):LOC107049046
Chain IDs:S (auth: BP)
Chain Length:92
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1D5PR40 Pfam ID:PF00237
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL18
Chain IDs:T (auth: BQ)
Chain Length:187
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):RPL19
Chain IDs:U (auth: BR)
Chain Length:138
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5ZKK8 Pfam ID:PF01280
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL20
Chain IDs:V (auth: BS)
Chain Length:176
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Gene (Uniprot):RPL21
Chain IDs:W (auth: BT)
Chain Length:165
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:R4GIQ2 Pfam ID:PF01157
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL22
Gene (Uniprot):RPL22
Chain IDs:X (auth: BU)
Chain Length:128
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TF8 Pfam ID:PF01776
Polymer Type:polypeptide(L)
Molecule:Ribosomal protei uL14
Chain IDs:Y (auth: BV)
Chain Length:217
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24
Gene (Uniprot):RPL24
Chain IDs:Z (auth: BW)
Chain Length:157
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V0XRE7 Pfam ID:PF01246
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL23
Chain IDs:AA (auth: BX)
Chain Length:155
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26 like 1
Gene (Uniprot):RPL26L1
Chain IDs:BA (auth: BY)
Chain Length:145
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F2Z4K6 Pfam ID:PF16906, PF00467
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL27
Gene (Uniprot):RPL27
Chain IDs:CA (auth: BZ)
Chain Length:136
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P61355 Pfam ID:PF00467, PF01777
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL15
Chain IDs:DA (auth: Ba)
Chain Length:257
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:EA (auth: Bb)
Chain Length:71
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1L1RNZ2 Pfam ID:PF01779
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL30
Gene (Uniprot):RPL30
Chain IDs:FA (auth: Bc)
Chain Length:115
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P67883 Pfam ID:PF01248
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Gene (Uniprot):RPL31
Chain IDs:GA (auth: Bd)
Chain Length:297
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1L1RT94 Pfam ID:PF01198
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:HA (auth: Be)
Chain Length:298
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:E1BVB1 Pfam ID:PF01655
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein eL33
Chain IDs:IA (auth: Bf)
Chain Length:110
Number of Molecules:1
Biological Source:Gallus gallus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Gene (Uniprot):RPL34
Chain IDs:JA (auth: Bg)
Chain Length:117
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A1L1S0X5 Pfam ID:PF01199
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29
Gene (Uniprot):RPL35
Chain IDs:KA (auth: Bh)
Chain Length:123
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TF7 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL36
Gene (Uniprot):RPL36
Chain IDs:LA (auth: Bi)
Chain Length:214
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TF6 Pfam ID:PF01158
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:MA (auth: Bj)
Chain Length:178
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:E1C810 Pfam ID:PF01907
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:NA (auth: Bk)
Chain Length:70
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:E1BU66 Pfam ID:PF01781
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL39
Gene (Uniprot):RPL39
Chain IDs:OA (auth: Bl)
Chain Length:211
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q98TF5 Pfam ID:PF00832
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):UBA52
Chain IDs:PA (auth: Bm)
Chain Length:131
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:O42388 Pfam ID:PF00240, PF01020
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L36a like
Gene (Uniprot):RPL36A
Chain IDs:QA (auth: Bo)
Chain Length:105
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V0YUB1 Pfam ID:PF00935
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein eL43
Gene (Uniprot):RPL37A
Chain IDs:RA (auth: Bp)
Chain Length:92
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P32046 Pfam ID:PF01780
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):RCJMB04_34p20
Chain IDs:SA (auth: Br)
Chain Length:138
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:Q5F346 Pfam ID:PF01778
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL10
Gene (Uniprot):RPLP0
Chain IDs:EC (auth: Bs)
Chain Length:176
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:P47826 Pfam ID:PF00466, PF17777, PF00428
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L12
Gene (Uniprot):RPL12
Chain IDs:FC (auth: Bt)
Chain Length:165
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:E1BTG1 Pfam ID:PF03946, PF00298
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein
Gene (Uniprot):RPL10A
Chain IDs:GC (auth: Bv)
Chain Length:217
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:F6SU35 Pfam ID:PF00687
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SERPINE1 mRNA binding protein 1
Gene (Uniprot):SERBP1
Chain IDs:CC (auth: S)
Chain Length:404
Number of Molecules:1
Biological Source:Gallus gallus
UniProt ID:A0A8V0ZUK5 Pfam ID:PF04774
Polymer Type:polyribonucleotide
Molecule:Phe tRNA
Chain IDs:BC (auth: V)
Chain Length:76
Number of Molecules:1
Biological Source:Gallus gallus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
1MA A A modified residue
5MC A C modified residue
6MZ A A modified residue
A2M A A modified residue
DDE DC HIS modified residue
HIC F HIS modified residue
MA6 TA A modified residue
MLZ QA LYS modified residue
OMC A C modified residue
OMG A G modified residue
OMU A U modified residue
PSU A U modified residue
SAC ZB SER modified residue
UR3 A U modified residue
Ligand Molecules
GDP
MG
ZN
Primary Citation
Cryo-EM structure of the inactive ribosome complex accumulated in chick embryo cells in cold-stress conditions.
Febs Lett. 598 537 547 (2024)
PMID: 38395592 DOI: 10.1002/1873-3468.14831

Abstact

Here, we present the high-resolution structure of the Gallus gallus 80S ribosome obtained from cold-treated chicken embryos. The translationally inactive ribosome complex contains elongation factor eEF2 with GDP, SERPINE1 mRNA binding protein 1 (SERBP1) and deacylated tRNA in the P/E position, showing common features with complexes already described in mammals. Modeling of most expansion segments of G. gallus 28S ribosomal RNA allowed us to identify specific features in their structural organization and to describe areas where a marked difference between mammalian and avian ribosomes could shed light on the evolution of the expansion segments. This study provides the first structure of an avian ribosome, establishing a model for future structural and functional studies on the translational machinery in Aves.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
8Q87