8Q84 image
Deposition Date 2023-08-17
Release Date 2023-12-06
Last Version Date 2023-12-20
Entry Detail
PDB ID:
8Q84
Keywords:
Title:
Outer kinetochore Dam1 protomer dimer Ndc80-Nuf2 coiled-coil complex
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.15 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NDC80
Gene (Uniprot):NDC80
Chain IDs:A, C (auth: F)
Chain Length:691
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kinetochore protein NUF2
Gene (Uniprot):NUF2
Chain IDs:B, D (auth: G)
Chain Length:292
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAM1
Gene (Uniprot):DAM1
Chain IDs:E (auth: I), O (auth: U), Y (auth: e)
Chain Length:343
Number of Molecules:3
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DUO1
Gene (Uniprot):DUO1
Chain IDs:F (auth: J), P (auth: V)
Chain Length:247
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAD2
Gene (Uniprot):DAD2
Chain IDs:G (auth: K), Q (auth: W)
Chain Length:133
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAD1
Gene (Uniprot):DAD1
Chain IDs:H (auth: L), R (auth: X)
Chain Length:94
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAD4
Gene (Uniprot):DAD4
Chain IDs:I (auth: M), S (auth: Y)
Chain Length:72
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit DAD3
Gene (Uniprot):DAD3
Chain IDs:J (auth: N), T (auth: Z)
Chain Length:94
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit SPC34
Gene (Uniprot):SPC34
Chain IDs:K (auth: O), U (auth: a)
Chain Length:691
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit ASK1
Gene (Uniprot):ASK1
Chain IDs:L (auth: P), V (auth: b)
Chain Length:292
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit HSK3
Gene (Uniprot):HSK3
Chain IDs:M (auth: Q), W (auth: c)
Chain Length:69
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DASH complex subunit SPC19
Gene (Uniprot):SPC19
Chain IDs:N (auth: R), X (auth: d)
Chain Length:165
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structural mechanism of outer kinetochore Dam1-Ndc80 complex assembly on microtubules.
Science 382 1184 1190 (2023)
PMID: 38060647 DOI: 10.1126/science.adj8736

Abstact

Kinetochores couple chromosomes to the mitotic spindle to segregate the genome during cell division. An error correction mechanism drives the turnover of kinetochore-microtubule attachments until biorientation is achieved. The structural basis for how kinetochore-mediated chromosome segregation is accomplished and regulated remains an outstanding question. In this work, we describe the cryo-electron microscopy structure of the budding yeast outer kinetochore Ndc80 and Dam1 ring complexes assembled onto microtubules. Complex assembly occurs through multiple interfaces, and a staple within Dam1 aids ring assembly. Perturbation of key interfaces suppresses yeast viability. Force-rupture assays indicated that this is a consequence of impaired kinetochore-microtubule attachment. The presence of error correction phosphorylation sites at Ndc80-Dam1 ring complex interfaces and the Dam1 staple explains how kinetochore-microtubule attachments are destabilized and reset.

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Disease

Primary Citation of related structures