8Q6L image
Entry Detail
PDB ID:
8Q6L
Keywords:
Title:
human Carbonic Anhydrase I in complex with 3,4-dihydro-1H-benzo[c][1,2]oxaborinin-1-ol
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-08-13
Release Date:
2024-08-21
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.23
R-Value Work:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Carbonic anhydrase 1
Chain IDs:A (auth: AAA), B (auth: BBB)
Chain Length:261
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Benzoxaborinine, New Chemotype for Carbonic Anhydrase Inhibition: Ex Novo Synthesis, Crystallography, In Silico Studies, and Anti-Melanoma Cell Line Activity.
J.Med.Chem. 67 18221 18234 (2024)
PMID: 39378331 DOI: 10.1021/acs.jmedchem.4c01516

Abstact

The benzoxaborinine scaffold, a homologue of benzoxaborole with an additional carbon atom in the boracycle, shows significant potential in developing new therapeutic agents. This study reports the synthesis, inhibition assays against four human carbonic anhydrase (hCA, EC 4.2.1.1) isoforms, and anti-melanoma evaluation of 7-aryl(thio)ureido-substituted benzoxaborinines. Some derivatives, particularly compound 11, exhibited potent inhibitory activity (below 65 nM) against hCA IX and XII and stronger antiproliferative effects than SLC-0111 on human melanoma cells under hypoxia. Crystallographic studies of benzoxaborinine 3 adducts with hCA I and II demonstrated the binding mode of this chemotype, revealing that although both benzoxaborinine 3 and benzoxaborole 10 share a similar zinc-binding mode, the expanded ring in benzoxaborinine led to a different orientation within the active site. These findings suggest that benzoxaborinines hold promise for designing novel carbonic anhydrase inhibitors.

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