8Q6K image
Deposition Date 2023-08-11
Release Date 2023-12-06
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8Q6K
Keywords:
Title:
Human IgD Fab in complex with an orthosteric inhibitor of Phl p 7
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Human IgD Fab heavy chain
Chain IDs:B (auth: H)
Chain Length:227
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Human IgD Fab light chain
Chain IDs:A (auth: L)
Chain Length:217
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nanobody 072
Chain IDs:C (auth: N)
Chain Length:147
Number of Molecules:1
Biological Source:Camelidae mixed library
Primary Citation
Expanding the Anti-Phl p 7 Antibody Toolkit: An Anti-Idiotype Nanobody Inhibitor.
Antibodies 12 ? ? (2023)
PMID: 37987253 DOI: 10.3390/antib12040075

Abstact

We have previously produced a toolkit of antibodies, comprising recombinant human antibodies of all but one of the human isotypes, directed against the polcalcin family antigen Phl p 7. In this work, we complete the toolkit of human antibody isotypes with the IgD version of the anti-Phl p 7 monoclonal antibody. We also raised a set of nanobodies against the IgD anti-Phl p 7 antibody and identify and characterize one paratope-specific nanobody. This nanobody also binds to the IgE isotype of this antibody, which shares the same idiotype, and orthosterically inhibits the interaction with Phl p 7. The 2.1 Å resolution X-ray crystal structure of the nanobody in complex with the IgD Fab is described.

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Primary Citation of related structures
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