8Q5I image
Deposition Date 2023-08-09
Release Date 2023-09-13
Last Version Date 2024-01-31
Entry Detail
PDB ID:
8Q5I
Keywords:
Title:
Structure of Candida albicans 80S ribosome in complex with cephaeline
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L20
Gene (Uniprot):RPL20B
Chain IDs:V (auth: 0)
Chain Length:172
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:25S rRNA
Chain IDs:A (auth: 1)
Chain Length:3359
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:Mixture of endogenous E-tRNAs
Chain IDs:D (auth: 10)
Chain Length:14
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21-A
Gene (Uniprot):RPL21A
Chain IDs:W (auth: 2)
Chain Length:160
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:5S
Chain IDs:B (auth: 3)
Chain Length:121
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:C (auth: 4)
Chain Length:158
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22-B
Gene (Uniprot):RPL22B
Chain IDs:X (auth: 5)
Chain Length:124
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L23-A
Gene (Uniprot):RPL23A
Chain IDs:Y (auth: 6)
Chain Length:137
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L24-A
Gene (Uniprot):RPL24A
Chain IDs:Z (auth: 7)
Chain Length:155
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L25
Gene (Uniprot):RPL25
Chain IDs:AA (auth: 8)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24
Gene (Uniprot):FOB64_002422
Chain IDs:BA (auth: 9)
Chain Length:127
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:18S ribosomal RNA
Chain IDs:TA (auth: A)
Chain Length:1787
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):RPL27
Chain IDs:CA (auth: AA)
Chain Length:136
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):RPL28
Chain IDs:DA (auth: AB)
Chain Length:149
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:EA (auth: AC)
Chain Length:63
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Gene (Uniprot):RPL30
Chain IDs:FA (auth: AD)
Chain Length:106
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31-B
Gene (Uniprot):RPL31B
Chain IDs:GA (auth: AE)
Chain Length:112
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L32
Gene (Uniprot):RPL32
Chain IDs:HA (auth: AF)
Chain Length:131
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L33-A
Gene (Uniprot):RPL33A
Chain IDs:IA (auth: AG)
Chain Length:107
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34-B
Gene (Uniprot):RPL34B
Chain IDs:JA (auth: AH)
Chain Length:122
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L29
Gene (Uniprot):FOB64_000276
Chain IDs:KA (auth: AI)
Chain Length:120
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:LA (auth: AJ)
Chain Length:99
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37-B
Gene (Uniprot):RPL37B
Chain IDs:MA (auth: AK)
Chain Length:90
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:NA (auth: AL)
Chain Length:78
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39
Gene (Uniprot):RPL39
Chain IDs:OA (auth: AM)
Chain Length:51
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L40-B
Gene (Uniprot):RPL40B
Chain IDs:PA (auth: AN)
Chain Length:52
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):RPL41
Chain IDs:QA (auth: AO)
Chain Length:25
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L42-B
Gene (Uniprot):RPL42B
Chain IDs:RA (auth: AP)
Chain Length:106
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L43-A
Gene (Uniprot):RPL43A
Chain IDs:SA (auth: AQ)
Chain Length:92
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S0
Gene (Uniprot):RPS0
Chain IDs:UA (auth: B)
Chain Length:261
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S1
Gene (Uniprot):RPS1
Chain IDs:VA (auth: C)
Chain Length:256
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):FOB64_002335, FOB64_002811
Chain IDs:WA (auth: D)
Chain Length:67
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S3
Gene (Uniprot):FOB64_004345
Chain IDs:XA (auth: E)
Chain Length:56
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS42
Chain IDs:YA (auth: F)
Chain Length:63
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S7
Gene (Uniprot):FOB64_006628
Chain IDs:ZA (auth: G)
Chain Length:5
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6A
Chain IDs:AB (auth: H)
Chain Length:236
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7A
Chain IDs:BB (auth: I)
Chain Length:186
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):FOB64_005152
Chain IDs:CB (auth: J)
Chain Length:254
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S4
Gene (Uniprot):FOB64_004972
Chain IDs:DB (auth: K)
Chain Length:189
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S10-A
Gene (Uniprot):RPS10A
Chain IDs:EB (auth: L)
Chain Length:118
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11A
Gene (Uniprot):CAALFM_C501540WA
Chain IDs:FB (auth: M)
Chain Length:298
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:GB (auth: O)
Chain Length:151
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14-A
Gene (Uniprot):RPS14A
Chain IDs:HB (auth: P)
Chain Length:132
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S15
Gene (Uniprot):RPS15
Chain IDs:IB (auth: Q)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S16
Gene (Uniprot):RPS16
Chain IDs:JB (auth: R)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S17-B
Gene (Uniprot):RPS17B
Chain IDs:KB (auth: S)
Chain Length:137
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18-B
Gene (Uniprot):RPS18B
Chain IDs:LB (auth: T)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19-A
Gene (Uniprot):RPS19A
Chain IDs:MB (auth: U)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S10
Gene (Uniprot):FOB64_004041
Chain IDs:NB (auth: V)
Chain Length:119
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Gene (Uniprot):RPS21
Chain IDs:OB (auth: W)
Chain Length:87
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S22-A
Gene (Uniprot):RPS22A
Chain IDs:PB (auth: X)
Chain Length:185
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S23 (S12)
Gene (Uniprot):FOB64_006094
Chain IDs:QB (auth: Y)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):RPS24B
Chain IDs:RB (auth: Z)
Chain Length:190
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S26
Gene (Uniprot):RPS26A
Chain IDs:SB (auth: b)
Chain Length:261
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):RPS27B
Chain IDs:TB (auth: c)
Chain Length:256
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28-B
Gene (Uniprot):RPS28B
Chain IDs:UB (auth: d)
Chain Length:67
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29A
Gene (Uniprot):CAALFM_CR08480CA, orf19.6415.1
Chain IDs:VB (auth: e)
Chain Length:56
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):RPS30
Chain IDs:WB (auth: f)
Chain Length:63
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polyribonucleotide
Molecule:DNA (5'-R(P*GP*GP*CP*AP*G)-3')
Chain IDs:XB (auth: g)
Chain Length:5
Number of Molecules:1
Biological Source:Synthetic construct
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L2-B
Gene (Uniprot):RPL2B
Chain IDs:E (auth: j)
Chain Length:254
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L3
Gene (Uniprot):RPL3
Chain IDs:F (auth: k)
Chain Length:189
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4-B
Gene (Uniprot):RPL4B
Chain IDs:G (auth: l)
Chain Length:118
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L5
Gene (Uniprot):RPL5
Chain IDs:H (auth: m)
Chain Length:298
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):rpl16
Chain IDs:I (auth: n)
Chain Length:176
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7-A
Gene (Uniprot):RPL7A
Chain IDs:J (auth: o)
Chain Length:151
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):RPL8B
Chain IDs:K (auth: p)
Chain Length:132
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9-B
Gene (Uniprot):RPL9B
Chain IDs:L (auth: q)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:M (auth: r)
Chain Length:142
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11-B
Gene (Uniprot):RPL11B
Chain IDs:N (auth: s)
Chain Length:137
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):RPL13
Chain IDs:O (auth: t)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14-B
Gene (Uniprot):RPL14B
Chain IDs:P (auth: u)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L15-A
Gene (Uniprot):RPL15A
Chain IDs:Q (auth: v)
Chain Length:119
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L13
Gene (Uniprot):FOB64_002221
Chain IDs:R (auth: w)
Chain Length:87
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L22
Gene (Uniprot):FOB64_005064
Chain IDs:S (auth: x)
Chain Length:185
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18-A
Gene (Uniprot):RPL18A
Chain IDs:T (auth: y)
Chain Length:145
Number of Molecules:1
Biological Source:Candida albicans
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L19-A
Gene (Uniprot):RPL19A
Chain IDs:U (auth: z)
Chain Length:190
Number of Molecules:1
Biological Source:Candida albicans
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLZ Y LYS modified residue
OMC A C modified residue
OMG A G modified residue
Primary Citation
Structural characterization of cephaeline binding to the eukaryotic ribosome using Cryo-Electron Microscopy
Biopolym Cell ? ? ? (2023)
DOI: 10.7124/bc.000AA4
Primary Citation of related structures