8Q21 image
Deposition Date 2023-08-01
Release Date 2024-08-14
Last Version Date 2025-03-12
Entry Detail
PDB ID:
8Q21
Keywords:
Title:
Crystal structure of Vanadium-dependent haloperoxidase R425S mutant (A. marina)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.23
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
F 41 3 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vanadium-dependent bromoperoxidase, putative
Gene (Uniprot):AM1_4975
Mutagens:R452S
Chain IDs:A
Chain Length:666
Number of Molecules:1
Biological Source:Acaryochloris marina
Primary Citation
Unraveling the molecular basis of substrate specificity and halogen activation in vanadium-dependent haloperoxidases.
Nat Commun 16 2083 2083 (2025)
PMID: 40021637 DOI: 10.1038/s41467-025-57023-1

Abstact

Vanadium-dependent haloperoxidases (VHPOs) are biotechnologically valuable and operationally versatile biocatalysts. VHPOs share remarkable active-site structural similarities yet display variable reactivity and selectivity. The factors dictating substrate specificity and, thus, a general understanding of VHPO reaction control still need to be discovered. This work's strategic single-point mutation in the cyanobacterial bromoperoxidase AmVHPO facilitates a selectivity switch to allow aryl chlorination. This mutation induces loop formation that interacts with the neighboring protein monomer, creating a tunnel to the active sites. Structural analysis of the substrate-R425S-mutant complex reveals a substrate-binding site at the interface of two adjacent units. There, residues Glu139 and Phe401 interact with arenes, extending the substrate residence time close to the vanadate cofactor and stabilizing intermediates. Our findings validate the long-debated existence of direct substrate binding and provide a detailed VHPO mechanistic understanding. This work will pave the way for a broader application of VHPOs in diverse chemical processes.

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