8Q0F image
Entry Detail
PDB ID:
8Q0F
EMDB ID:
Title:
Inward-facing, open2 proteoliposome complex I at 3.1 A. Initially purified in DDM.
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-07-28
Release Date:
2024-06-05
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 3
Chain IDs:A
Chain Length:115
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Chain IDs:B
Chain Length:84
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial
Chain IDs:C
Chain Length:266
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Chain IDs:D
Chain Length:463
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Chain IDs:E
Chain Length:249
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Chain IDs:F
Chain Length:464
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Chain IDs:G
Chain Length:154
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 1
Chain IDs:H
Chain Length:189
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Chain IDs:I
Chain Length:212
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 6
Chain IDs:J
Chain Length:175
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4L
Chain IDs:K
Chain Length:98
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 5
Chain IDs:L
Chain Length:606
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 4
Chain IDs:M
Chain Length:459
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH-ubiquinone oxidoreductase chain 2
Chain IDs:N
Chain Length:179
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Chain IDs:O
Chain Length:137
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Chain IDs:P
Chain Length:380
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Chain IDs:Q
Chain Length:145
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Chain IDs:R
Chain Length:124
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Chain IDs:S
Chain Length:109
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:Acyl carrier protein, mitochondrial
Chain IDs:T, U
Chain Length:156
Number of Molecules:2
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Chain IDs:V
Chain Length:116
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Chain IDs:W
Chain Length:128
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Chain IDs:X
Chain Length:172
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Chain IDs:Y
Chain Length:141
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Chain IDs:Z
Chain Length:144
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Chain IDs:AA (auth: a)
Chain Length:115
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Chain IDs:BA (auth: b)
Chain Length:84
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Chain IDs:CA (auth: c)
Chain Length:266
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 subunit C2
Chain IDs:DA (auth: d)
Chain Length:463
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Chain IDs:EA (auth: e)
Chain Length:249
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Chain IDs:FA (auth: f)
Chain Length:464
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Chain IDs:GA (auth: g)
Chain Length:154
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Chain IDs:HA (auth: h)
Chain Length:189
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Chain IDs:IA (auth: i)
Chain Length:212
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
Chain IDs:JA (auth: j)
Chain Length:175
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Chain IDs:KA (auth: k)
Chain Length:98
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Chain IDs:LA (auth: l)
Chain Length:606
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Chain IDs:MA (auth: m)
Chain Length:459
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Chain IDs:NA (auth: n)
Chain Length:179
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Chain IDs:OA (auth: o)
Chain Length:137
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Chain IDs:PA (auth: p)
Chain Length:380
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Chain IDs:QA (auth: q)
Chain Length:145
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7
Chain IDs:RA (auth: r)
Chain Length:124
Number of Molecules:1
Biological Source:Bos taurus
Polymer Type:polypeptide(L)
Description:NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial
Chain IDs:SA (auth: s)
Chain Length:109
Number of Molecules:1
Biological Source:Bos taurus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MR D ARG modified residue
AME DA MET modified residue
AYA Y ALA modified residue
FME A MET modified residue
SAC IA SER modified residue
Primary Citation
Molecular mechanism of the ischemia-induced regulatory switch in mammalian complex I.
Science 384 1247 1253 (2024)
PMID: 38870289 DOI: 10.1126/science.ado2075

Abstact

Respiratory complex I is an efficient driver for oxidative phosphorylation in mammalian mitochondria, but its uncontrolled catalysis under challenging conditions leads to oxidative stress and cellular damage. Ischemic conditions switch complex I from rapid, reversible catalysis into a dormant state that protects upon reoxygenation, but the molecular basis for the switch is unknown. We combined precise biochemical definition of complex I catalysis with high-resolution cryo-electron microscopy structures in the phospholipid bilayer of coupled vesicles to reveal the mechanism of the transition into the dormant state, modulated by membrane interactions. By implementing a versatile membrane system to unite structure and function, attributing catalytic and regulatory properties to specific structural states, we define how a conformational switch in complex I controls its physiological roles.

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Primary Citation of related structures