8PXS image
Deposition Date 2023-07-24
Release Date 2023-10-18
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8PXS
Title:
Short RNA binding to peptide amyloids
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Method Details:
Experimental Method:
Conformers Calculated:
4000
Conformers Submitted:
10
Selection Criteria:
target function
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VAL-ALA-GLN-ALA-GLN-ILE-ASN-ILE
Chain IDs:A, B, C, E (auth: D), F (auth: E), G (auth: F), H (auth: G), I (auth: H), J (auth: I), K (auth: J)
Chain Length:9
Number of Molecules:10
Biological Source:Escherichia coli
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*GP*UP*CP*A)-3')
Chain IDs:D (auth: R)
Chain Length:4
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
An Analysis of Nucleotide-Amyloid Interactions Reveals Selective Binding to Codon-Sized RNA.
J.Am.Chem.Soc. 145 21915 21924 (2023)
PMID: 37782045 DOI: 10.1021/jacs.3c06287

Abstact

Interactions between RNA and proteins are the cornerstone of many important biological processes from transcription and translation to gene regulation, yet little is known about the ancient origin of said interactions. We hypothesized that peptide amyloids played a role in the origin of life and that their repetitive structure lends itself to building interfaces with other polymers through avidity. Here, we report that short RNA with a minimum length of three nucleotides binds in a sequence-dependent manner to peptide amyloids. The 3'-5' linked RNA backbone appears to be well-suited to support these interactions, with the phosphodiester backbone and nucleobases both contributing to the affinity. Sequence-specific RNA-peptide interactions of the kind identified here may provide a path to understanding one of the great mysteries rooted in the origin of life: the origin of the genetic code.

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Primary Citation of related structures