8PX1 image
Deposition Date 2023-07-22
Release Date 2023-10-25
Last Version Date 2024-11-06
Entry Detail
PDB ID:
8PX1
Keywords:
Title:
Structure of salmonella effector SseK3, solved at wavelength 2.75 A
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-LEE encoded effector protein NleB
Gene (Uniprot):B1P38_17070, DMO92_23130, EER35_17035, F3R12_13265, G1O05_10145, GBS44_21370
Chain IDs:A, B, C, D
Chain Length:320
Number of Molecules:4
Biological Source:Salmonella enterica subsp. enterica serovar Typhimurium
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation

Abstact

Despite recent advances in cryo-electron microscopy and artificial intelligence-based model predictions, a significant fraction of structure determinations by macromolecular crystallography still requires experimental phasing, usually by means of single-wavelength anomalous diffraction (SAD) techniques. Most synchrotron beamlines provide highly brilliant beams of X-rays of between 0.7 and 2 Å wavelength. Use of longer wavelengths to access the absorption edges of biologically important lighter atoms such as calcium, potassium, chlorine, sulfur and phosphorus for native-SAD phasing is attractive but technically highly challenging. The long-wavelength beamline I23 at Diamond Light Source overcomes these limitations and extends the accessible wavelength range to λ = 5.9 Å. Here we report 22 macromolecular structures solved in this extended wavelength range, using anomalous scattering from a range of elements which demonstrate the routine feasibility of lighter atom phasing. We suggest that, in light of its advantages, long-wavelength crystallography is a compelling option for experimental phasing.

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Primary Citation of related structures
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