8PWM image
Entry Detail
PDB ID:
8PWM
Keywords:
Title:
Crystal structure of VDR in complex with Des-C-Ring and Aromatic-D-Ring analog 3b
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-07-20
Release Date:
2024-08-21
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Vitamin D3 receptor A
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Danio rerio
Polymer Type:polypeptide(L)
Description:Nuclear receptor coactivator 2
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Further Studies on the Highly Active Des-C-Ring and Aromatic-D-Ring Analogues of 1 alpha ,25-Dihydroxyvitamin D 3 (Calcitriol): Refinement of the Side Chain.
J.Med.Chem. 66 15326 15339 (2023)
PMID: 37910811 DOI: 10.1021/acs.jmedchem.3c01371

Abstact

Current efforts in the vitamin D field are directed toward the development of highly antiproliferative yet noncalcemic analogues of the natural hormone 1α,25-dihydroxyvitamin D3 (1,25D3). We have recently reported the design, synthesis, biological evaluation, and crystal structures of a series of novel analogues that both lack the steroidal C-ring and have an m-phenylene ring replacing the steroidal cyclopentane D-ring. We have now investigated the potentiating effects of incorporating selected modifications (hexafluorination and/or an internal triple bond) within the steroidal side chain in our series. An alternative synthetic strategy (Wittig-Horner approach instead of our previously used Pd-catalyzed tandem cyclization/cross-coupling) for the construction of the vitamin D triene system was found convenient for the target compounds 2, 3a, 3b, and 3c of this report. These modifications enhance vitamin D nuclear receptor (VDR) interactions and consequently VDR-associated biological properties compared to parental PG-136 compound while maintaining normal calcium levels.

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