8PQ5 image
Deposition Date 2023-07-10
Release Date 2024-09-11
Last Version Date 2025-03-26
Entry Detail
PDB ID:
8PQ5
Title:
Human Cohesin ATPase module with an open DNA exit gate
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 1A
Chain IDs:A
Chain Length:456
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Structural maintenance of chromosomes protein 3
Chain IDs:B
Chain Length:462
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:64-kDa C-terminal product
Gene (Uniprot):RAD21
Chain IDs:C
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The cohesin ATPase cycle is mediated by specific conformational dynamics and interface plasticity of SMC1A and SMC3 ATPase domains.
Cell Rep 43 114656 114656 (2024)
PMID: 39240714 DOI: 10.1016/j.celrep.2024.114656

Abstact

Cohesin is key to eukaryotic genome organization and acts throughout the cell cycle in an ATP-dependent manner. The mechanisms underlying cohesin ATPase activity are poorly understood. Here, we characterize distinct steps of the human cohesin ATPase cycle and show that the SMC1A and SMC3 ATPase domains undergo specific but concerted structural rearrangements along this cycle. Specifically, whereas the proximal coiled coil of the SMC1A ATPase domain remains conformationally stable, that of the SMC3 displays an intrinsic flexibility. The ATP-dependent formation of the heterodimeric SMC1A/SMC3 ATPase module (engaged state) favors this flexibility, which is counteracted by NIPBL and DNA binding (clamped state). Opening of the SMC3/RAD21 interface (open-engaged state) stiffens the SMC3 proximal coiled coil, thus constricting together with that of SMC1A the ATPase module DNA-binding chamber. The plasticity of the ATP-dependent interface between the SMC1A and SMC3 ATPase domains enables these structural rearrangements while keeping the ATP gate shut. VIDEO ABSTRACT.

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Primary Citation of related structures