8PP2 image
Deposition Date 2023-07-06
Release Date 2023-12-27
Last Version Date 2024-01-17
Entry Detail
PDB ID:
8PP2
Keywords:
Title:
Binary crystal structure of positively supercharged ferritin variant Ftn(pos) and native(K86Q) human heavy chain ferritin (Mg formate condition)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.24
R-Value Work:
0.20
Space Group:
P 4
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ferritin heavy chain, N-terminally processed
Gene (Uniprot):FTH1
Mutations:K86Q, A18K, C90K, N98R, C102K, H105K, N25R, N109K, D123K, E162R
Chain IDs:A, B, C, D, E, F
Chain Length:172
Number of Molecules:6
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ferritin heavy chain, N-terminally processed
Gene (Uniprot):FTH1
Mutations:K86Q
Chain IDs:G, H, I, J, K, L
Chain Length:172
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Assembly Requirements for the Construction of Large-Scale Binary Protein Structures.
Biomacromolecules 25 177 187 (2024)
PMID: 38059469 DOI: 10.1021/acs.biomac.3c00891

Abstact

The precise assembly of multiple biomacromolecules into well-defined structures and materials is of great importance for various biomedical and nanobiotechnological applications. In this study, we investigate the assembly requirements for two-component materials using charged protein nanocages as building blocks. To achieve this, we designed several variants of ferritin nanocages to determine the surface characteristics necessary for the formation of large-scale binary three-dimensional (3D) assemblies. These nanocage variants were employed in protein crystallization experiments and macromolecular crystallography analyses, complemented by computational methods. Through the screening of nanocage variant combinations at various ionic strengths, we identified three essential features for successful assembly: (1) the presence of a favored crystal contact region, (2) the presence of a charged patch not involved in crystal contacts, and (3) sufficient distinctiveness between the nanocages. Surprisingly, the absence of noncrystal contact mediating patches had a detrimental effect on the assemblies, highlighting their unexpected importance. Intriguingly, we observed the formation of not only binary structures but also both negatively and positively charged unitary structures under previously exclusively binary conditions. Overall, our findings will inform future design strategies by providing some design rules, showcasing the utility of supercharging symmetric building blocks in facilitating the assembly of biomacromolecules into large-scale binary 3D assemblies.

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Primary Citation of related structures