ISDA: 8PML

Deposition Date 2023-06-29

Release Date 2024-04-17

Last Version Date 2025-02-05

Entry Detail

PDB ID:

8PML

Keywords:

PLANT PROTEIN

Title:

Structure of Nal1 protein , SPIKE allele from japonica rice, construct 46-458

Biological Source:

Source Organism:

Oryza sativa Japonica Group (Taxon ID: 39947)

Host Organism:

Escherichia coli K-12

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.95 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 21 21 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein NARROW LEAF 1
Gene (Uniprot):NAL1
Chain IDs:A, B, C, D, E, F
Chain Length:413
Number of Molecules:6
Biological Source:Oryza sativa Japonica Group

UniProt ID:B4XT64

Ligand Molecules

ATP

Primary Citation

The catalytic triad of rice NARROW LEAF1 involves H234.

Huang, L.Y, Liu, N.N, Chen, W.F, Ai, X, Li, H.H, Zhang, Z.L, Hou, X.M, Fosse, P, Mauffret, O, Lei, D.S, Rety, S, Xi, X.G.Show

Nat.Plants 10 743 748 (2024)

PMID: 38600265 DOI: 10.1038/s41477-024-01668-1

Abstact

NARROW LEAF1 (NAL1) exerts a multifaceted influence on leaf morphology and crop yield. Recent crystal study proposed that histidine 233 (H233) is part of the catalytic triad. Here we report that unlike suggested previously, H234 instead of H233 is a component of the catalytic triad alongside residues D291 and S385 in NAL1. Remarkably, residue 233 unexpectedly plays a pivotal role in regulating NAL1's proteolytic activity. These findings establish a strong foundation for utilizing NAL1 in breeding programs aimed at improving crop yield.

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Protein

Chemical

Disease

Primary Citation of related structures

Abstact

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