ISDA

Deposition Date 2023-06-26

Release Date 2024-05-08

Last Version Date 2024-11-13

Entry Detail

PDB ID:

8PKC

Keywords:

ALLERGEN

Title:

Structure of Api m1 in complex with the AM1-4 nanobody

Biological Source:

Source Organism:

Lama glama (Taxon ID: 9844)
Apis mellifera (Taxon ID: 7460)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.10 Å

R-Value Free:

0.29

R-Value Work:

0.25

R-Value Observed:

0.26

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Phospholipase A2
Chain IDs:A, B
Chain Length:134
Number of Molecules:2
Biological Source:Apis mellifera

UniProt ID:P00630 Pfam ID:PF05826 EC:3.1.1.4

Polymer Type:polypeptide(L)
Molecule:AM1-4 nanobody
Chain IDs:C, D
Chain Length:129
Number of Molecules:2
Biological Source:Lama glama

Ligand Molecules

NAG

Primary Citation

Nanobody-based IgG formats as blocking antibodies of the major honeybee venom allergen Api m 1

Aagaard, J.B, Afonine, P.V, Grosse-Kunstleve, R.W, Echols, N, Headd, J.J, Moriarty, N.W, Mustyakimov, M, Terwilliger, T.C, Urzhumtsev, A, Zwart, P.H, Adams, P.D.Show

To be published ? ? ? (?)

Primary Citation of related structures