8PF5 image
Entry Detail
PDB ID:
8PF5
Keywords:
Title:
Crystal structure of Trypanosoma brucei trypanothione reductase in complex with 1-(3,4-dichlorobenzyl)-4-(((5-((4-fluorophenethyl)carbamoyl)furan-2-yl)methyl)carbamoyl)-1-(3-phenylpropyl)piperazin-1-ium
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-06-15
Release Date:
2024-04-03
Method Details:
Experimental Method:
Resolution:
2.42 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Trypanothione reductase
Chain IDs:A
Chain Length:495
Number of Molecules:1
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Description:Trypanothione reductase
Chain IDs:B, C
Chain Length:494
Number of Molecules:2
Biological Source:Trypanosoma brucei
Polymer Type:polypeptide(L)
Description:Trypanothione reductase
Chain IDs:D
Chain Length:495
Number of Molecules:1
Biological Source:Trypanosoma brucei
Primary Citation
Fragment Merging, Growing, and Linking Identify New Trypanothione Reductase Inhibitors for Leishmaniasis.
J.Med.Chem. 67 402 419 (2024)
PMID: 38164929 DOI: 10.1021/acs.jmedchem.3c01439

Abstact

Trypanothione reductase (TR) is a suitable target for drug discovery approaches against leishmaniasis, although the identification of potent inhibitors is still challenging. Herein, we harnessed a fragment-based drug discovery (FBDD) strategy to develop new TR inhibitors. Previous crystallographic screening identified fragments 1-3, which provided ideal starting points for a medicinal chemistry campaign. In silico investigations revealed critical hotspots in the TR binding site, guiding our structure- and ligand-based structure-actvity relationship (SAR) exploration that yielded fragment-derived compounds 4-14. A trend of improvement in Leishmania infantum TR inhibition was detected along the optimization and confirmed by the crystal structures of 9, 10, and 14 in complex with Trypanosoma brucei TR. Compound 10 showed the best TR inhibitory profile (Ki = 0.2 μM), whereas 9 was the best one in terms of in vitro and ex vivo activity. Although further fine-tuning is needed to improve selectivity, we demonstrated the potentiality of FBDD on a classic but difficult target for leishmaniasis.

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