ISDA

Deposition Date 2023-06-14

Release Date 2024-06-26

Last Version Date 2024-06-26

Entry Detail

PDB ID:

8PEL

Keywords:

RNA BINDING PROTEIN

Title:

Structure of C. thermophilum RNA exosome core

Biological Source:

Source Organism:

Thermochaetoides thermophila DSM 1495 (Taxon ID: 759272)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.81 Å

R-Value Free:

0.29

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Rrp45
Gene (Uniprot):CTHT_0027490
Chain IDs:A
Chain Length:293
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0S755 Pfam ID:PF01138, PF03725

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Exoribonuclease phosphorolytic domain-containing protein
Gene (Uniprot):CTHT_0055610
Chain IDs:B
Chain Length:284
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0SC21 Pfam ID:PF01138, PF03725

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Exoribonuclease-like protein
Gene (Uniprot):CTHT_0014300
Chain IDs:C
Chain Length:357
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0S1P1 Pfam ID:PF01138

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Exoribonuclease phosphorolytic domain-containing protein
Gene (Uniprot):CTHT_0056790
Chain IDs:D
Chain Length:258
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0SCD1 Pfam ID:PF01138

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Exoribonuclease phosphorolytic domain-containing protein
Gene (Uniprot):CTHT_0002870
Chain IDs:E
Chain Length:413
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0RZG4 Pfam ID:PF01138

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Exosome complex component MTR3
Gene (Uniprot):MTR3
Chain IDs:F
Chain Length:284
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:P0CT46 Pfam ID:PF01138

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribosomal RNA-processing protein 40
Gene (Uniprot):CTHT_0008000
Mutations:G-1, A0
Chain IDs:G
Chain Length:256
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0RZX8 Pfam ID:PF18311, PF21262, PF15985

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative exosome complex protein
Gene (Uniprot):CTHT_0045080
Chain IDs:H
Chain Length:358
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0S9A0 Pfam ID:PF14382, PF21266

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Putative exosome 3'->5 protein
Gene (Uniprot):CTHT_0062250
Chain IDs:I
Chain Length:220
Number of Molecules:1
Biological Source:Thermochaetoides thermophila DSM 1495

UniProt ID:G0SE33 Pfam ID:PF14382, PF10447

Ligand Molecules

Primary Citation

Beyond static structures: quantitative dynamics in the eukaryotic RNA exosome complex

Liebau, J, Lazzaretti, D, Bichler, A, Pilsl, M, Sprangers, R.Show

Biorxiv ? ? ? (2024)

DOI: 10.1101/2024.01.28.577622

Primary Citation of related structures