8PEH image
Entry Detail
PDB ID:
8PEH
Keywords:
Title:
Crystal structure of Lotus japonicus SYMRK kinase domain D738N
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2023-06-14
Release Date:
2024-02-28
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Receptor-like kinase SYMRK
Chain IDs:A (auth: B), B (auth: C), C (auth: A)
Chain Length:300
Number of Molecules:3
Biological Source:Lotus japonicus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CME A CYS modified residue
Primary Citation
Phosphorylation of the alpha-I motif in SYMRK drives root nodule organogenesis.
Proc.Natl.Acad.Sci.USA 121 e2311522121 e2311522121 (2024)
PMID: 38363863 DOI: 10.1073/pnas.2311522121

Abstact

Symbiosis receptor-like kinase SYMRK is required for root nodule symbiosis between legume plants and nitrogen-fixing bacteria. To understand symbiotic signaling from SYMRK, we determined the crystal structure to 1.95 Å and mapped the phosphorylation sites onto the intracellular domain. We identified four serine residues in a conserved "alpha-I" motif, located on the border between the kinase core domain and the flexible C-terminal tail, that, when phosphorylated, drives organogenesis. Substituting the four serines with alanines abolished symbiotic signaling, while substituting them with phosphorylation-mimicking aspartates induced the formation of spontaneous nodules in the absence of bacteria. These findings show that the signaling pathway controlling root nodule organogenesis is mediated by SYMRK phosphorylation, which may help when engineering this trait into non-legume plants.

Legend

Protein

Chemical

Disease

Primary Citation of related structures