8PAG image
Deposition Date 2023-06-07
Release Date 2024-03-27
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8PAG
Keywords:
Title:
Crystal structure of the ectodomain of Norway rat pestivirus E2 glycoprotein
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.50 Å
R-Value Free:
0.28
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 43 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:Norway rat pestivirus
Ligand Molecules
Primary Citation
Structural comparison of typical and atypical E2 pestivirus glycoproteins.
Structure 32 273 281.e4 (2024)
PMID: 38176409 DOI: 10.1016/j.str.2023.12.003

Abstact

Pestiviruses, within the family Flaviviridae, are economically important viruses of livestock. In recent years, new pestiviruses have been reported in domestic animals and non-cloven-hoofed animals. Among them, atypical porcine pestivirus (APPV) and Norway rat pestivirus (NRPV) have relatively little sequence conservation in their surface glycoprotein E2. Despite E2 being the main target for neutralizing antibodies and necessary for cell attachment and viral fusion, the mechanism of viral entry remains elusive. To gain further insights into the pestivirus E2 mechanism of action and to assess its diversity within the genus, we report X-ray structures of the pestivirus E2 proteins from APPV and NRPV. Despite the highly divergent structures, both are able to dimerize through their C-terminal domain and contain a solvent-exposed β-hairpin reported to be involved in host receptor binding. Functional analysis of this β-hairpin in the context of BVDV revealed its ability to rescue viral infectivity.

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Primary Citation of related structures