8P94 image
Deposition Date 2023-06-05
Release Date 2024-01-03
Last Version Date 2024-05-29
Entry Detail
PDB ID:
8P94
Title:
Cryo-EM structure of cortactin stabilized Arp2/3-complex nucleated actin branches
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Sus scrofa (Taxon ID: 9823)
Amanita phalloides (Taxon ID: 67723)
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 3
Gene (Uniprot):ACTR3
Chain IDs:A
Chain Length:7
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2
Gene (Uniprot):ACTR2
Chain IDs:B
Chain Length:394
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 1B
Gene (Uniprot):ARPC1B
Chain IDs:C
Chain Length:372
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 2
Gene (Uniprot):ARPC2
Chain IDs:D
Chain Length:7
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 3
Gene (Uniprot):ARPC3
Chain IDs:E
Chain Length:178
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 4
Gene (Uniprot):ARPC4
Chain IDs:F
Chain Length:168
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 2/3 complex subunit 5-like protein
Gene (Uniprot):ARPC5L
Chain IDs:G
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:H, J, K, L (auth: N), M (auth: O), N (auth: P), O (auth: Q), P (auth: R), Q (auth: S), T (auth: W)
Chain Length:7
Number of Molecules:10
Biological Source:Sus scrofa
Polymer Type:polypeptide(L)
Molecule:Src substrate cortactin
Gene (Uniprot):Cttn
Chain IDs:I
Chain Length:546
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:F-actin-capping protein subunit alpha-1
Gene (Uniprot):Capza1
Chain IDs:R (auth: U)
Chain Length:286
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Isoform 2 of F-actin-capping protein subunit beta
Gene (Uniprot):Capzb
Chain IDs:S (auth: V)
Chain Length:272
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Phalloidin
Chain IDs:U (auth: a), V (auth: b), W (auth: c), X (auth: d), Y (auth: h), Z (auth: i), AA (auth: j), BA (auth: k), CA (auth: l), DA (auth: m)
Chain Length:7
Number of Molecules:10
Biological Source:Amanita phalloides
Peptide-like Molecules
PRD_002366
Primary Citation
Cortactin stabilizes actin branches by bridging activated Arp2/3 to its nucleated actin filament.
Nat.Struct.Mol.Biol. 31 801 809 (2024)
PMID: 38267598 DOI: 10.1038/s41594-023-01205-2

Abstact

Regulation of the assembly and turnover of branched actin filament networks nucleated by the Arp2/3 complex is essential during many cellular processes, including cell migration and membrane trafficking. Cortactin is important for actin branch stabilization, but the mechanism by which this occurs is unclear. Given this, we determined the structure of vertebrate cortactin-stabilized Arp2/3 actin branches using cryogenic electron microscopy. We find that cortactin interacts with the new daughter filament nucleated by the Arp2/3 complex at the branch site, rather than the initial mother actin filament. Cortactin preferentially binds activated Arp3. It also stabilizes the F-actin-like interface of activated Arp3 with the first actin subunit of the new filament, and its central repeats extend along successive daughter-filament subunits. The preference of cortactin for activated Arp3 explains its retention at the actin branch and accounts for its synergy with other nucleation-promoting factors in regulating branched actin network dynamics.

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