8P6I image
Deposition Date 2023-05-26
Release Date 2024-04-03
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8P6I
Keywords:
Title:
Crystal structure of the 139H2 Fab fragment bound to Muc1 peptide epitope
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mucin-1
Gene (Uniprot):MUC1
Chain IDs:A, D (auth: a)
Chain Length:9
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:139H2 HC
Chain IDs:B (auth: H), E (auth: h)
Chain Length:236
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:139H2 LC
Chain IDs:C (auth: L), F (auth: l)
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Reverse-engineering the anti-MUC1 antibody 139H2 by mass spectrometry-based de novo sequencing.
Life Sci Alliance 7 ? ? (2024)
PMID: 38508723 DOI: 10.26508/lsa.202302366

Abstact

Mucin 1 (MUC1) is a transmembrane mucin expressed at the apical surface of epithelial cells at mucosal surfaces. MUC1 has a barrier function against bacterial invasion and is well known for its aberrant expression and glycosylation in adenocarcinomas. The MUC1 extracellular domain contains a variable number of tandem repeats (VNTR) of 20 amino acids, which are heavily O-linked glycosylated. Monoclonal antibodies against the MUC1 VNTR are powerful research tools with applications in the diagnosis and treatment of MUC1-expressing cancers. Here, we report direct mass spectrometry-based sequencing of anti-MUC1 hybridoma-derived 139H2 IgG, enabling reverse-engineering of the functional recombinant monoclonal antibody. The crystal structure of the 139H2 Fab fragment in complex with the MUC1 epitope was solved, revealing the molecular basis of 139H2 binding specificity to MUC1 and its tolerance to O-glycosylation of the VNTR. The available sequence of 139H2 will allow further development of MUC1-related diagnostic, targeting, and treatment strategies.

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Primary Citation of related structures
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