8P6G image
Deposition Date 2023-05-26
Release Date 2024-04-03
Last Version Date 2024-11-13
Entry Detail
PDB ID:
8P6G
Title:
Crystal structure of the improved version of the Genetically Encoded Green Calcium Indicator YTnC2-5
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 65
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Genetically Encoded Green Calcium Indicator YTnC2-5 based on Troponin C from toadfish
Chain IDs:A (auth: B), B (auth: D)
Chain Length:316
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
YTnC2, an improved genetically encoded green calcium indicator based on toadfish troponin C.
Febs Open Bio 13 2047 2060 (2023)
PMID: 37650870 DOI: 10.1002/2211-5463.13702

Abstact

Genetically encoded calcium indicators based on truncated troponin C are attractive probes for calcium imaging due to their relatively small molecular size and twofold reduced calcium ion buffering. However, the best-suited members of this family, YTnC and cNTnC, suffer from low molecular brightness, limited dynamic range, and/or poor sensitivity to calcium transients in neurons. To overcome these limitations, we developed an enhanced version of YTnC, named YTnC2. Compared with YTnC, YTnC2 had 5.7-fold higher molecular brightness and 6.4-fold increased dynamic range in vitro. YTnC2 was successfully used to reveal calcium transients in the cytosol and in the lumen of mitochondria of both mammalian cells and cultured neurons. Finally, we obtained and analyzed the crystal structure of the fluorescent domain of the YTnC2 mutant.

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Primary Citation of related structures
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