8P64 image
Entry Detail
PDB ID:
8P64
Title:
Co-crystal structure of PD-L1 with low molecular weight inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2023-05-25
Release Date:
2024-03-06
Method Details:
Experimental Method:
Resolution:
3.31 Å
R-Value Free:
0.29
R-Value Work:
0.23
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Programmed cell death 1 ligand 1
Chain IDs:A, B
Chain Length:131
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
1,5-Disubstituted tetrazoles as PD-1/PD-L1 antagonists.
Rsc Med Chem 15 1210 1215 (2024)
PMID: 38665826 DOI: 10.1039/d3md00746d

Abstact

The progress in cancer survival and treatment has witnessed a remarkable transformation through the innovative approach of targeting the inhibitory immune checkpoint protein PD-1/PD-L1 complex by mAbs, e.g. pembrolizumab (Keytruda). While generating 17.2 billion U.S. dollars in revenue in 2021, the true significance of these developments lies in their ability to enhance cancer patient outcomes. Despite the proven efficacy of mAbs in inhibiting the PD-1/PD-L1 signaling pathways, they face significant challenges, including limited response rates, high production costs, missing oral bioavailability, and extended half-lives that can lead to immune-related adverse effects. A promising alternative approach involves the use of small molecules acting as PD-1/PD-L1 antagonists to stimulate PD-L1 dimerization. However, the precise mechanisms of action of these molecules remain partially understood, posing challenges to their development. In this context, our research focuses on the creation of a novel scaffold based on the Ugi tetrazole four-component reaction (UT-4CR) to develop low-molecular-weight inhibitors of PD-L1. Employing structure-based methods, we synthesized a library of small compounds using biphenyl vinyl isocyanide, leading to the discovery of a structure-activity relationship among 1,5-disubstituted tetrazole-based inhibitors. Supported by a cocrystal structure with PD-L1, these inhibitors underwent biophysical testing, including HTRF and protein NMR experiments, resulting in the identification of potent candidates with sub-micromolar PD-L1 affinities. This finding opens opportunities to the further development of a new class of PD-L1 antagonists, holding promise for improved cancer immunotherapy strategies.

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Primary Citation of related structures