8P5O image
Deposition Date 2023-05-24
Release Date 2023-07-05
Last Version Date 2024-10-16
Entry Detail
PDB ID:
8P5O
Title:
Proline activating adenylation domain of gramicidin S synthetase 2 - GrsB1-Acore
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
R-Value Free:
0.24
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Gramicidin S synthase 2
Gene (Uniprot):grsB
Chain IDs:A, B, C, D
Chain Length:405
Number of Molecules:4
Biological Source:Aneurinibacillus migulanus
Primary Citation
Directed Evolution of Piperazic Acid Incorporation by a Nonribosomal Peptide Synthetase.
Angew.Chem.Int.Ed.Engl. 62 e202304843 e202304843 (2023)
PMID: 37326625 DOI: 10.1002/anie.202304843

Abstact

Engineering of biosynthetic enzymes is increasingly employed to synthesize structural analogues of antibiotics. Of special interest are nonribosomal peptide synthetases (NRPSs) responsible for the production of important antimicrobial peptides. Here, directed evolution of an adenylation domain of a Pro-specific NRPS module completely switched substrate specificity to the non-standard amino acid piperazic acid (Piz) bearing a labile N-N bond. This success was achieved by UPLC-MS/MS-based screening of small, rationally designed mutant libraries and can presumably be replicated with a larger number of substrates and NRPS modules. The evolved NRPS produces a Piz-derived gramicidin S analogue. Thus, we give new impetus to the too-early dismissed idea that widely accessible low-throughput methods can switch the specificity of NRPSs in a biosynthetically useful fashion.

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Primary Citation of related structures