8P5E image
Entry Detail
PDB ID:
8P5E
EMDB ID:
Keywords:
Title:
S. cerevisiae nexus-sCMGE after DNA replication initiation
Biological Source:
PDB Version:
Deposition Date:
2023-05-24
Release Date:
2024-05-29
Method Details:
Experimental Method:
Resolution:
3.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM2
Chain IDs:A (auth: 2)
Chain Length:868
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM3
Chain IDs:B (auth: 3)
Chain Length:1006
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM4
Chain IDs:C (auth: 4)
Chain Length:933
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Minichromosome maintenance protein 5
Chain IDs:D (auth: 5)
Chain Length:775
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM6
Chain IDs:E (auth: 6)
Chain Length:1017
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM7
Chain IDs:F (auth: 7)
Chain Length:845
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Description:DNA (19-MER)
Chain IDs:G (auth: A)
Chain Length:19
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (7-MER)
Chain IDs:H (auth: B)
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:DNA replication complex GINS protein PSF3
Chain IDs:I (auth: C)
Chain Length:229
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication complex GINS protein SLD5
Chain IDs:J (auth: D)
Chain Length:294
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cell division control protein 45
Chain IDs:K (auth: E)
Chain Length:657
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA polymerase epsilon subunit B
Chain IDs:L (auth: F)
Chain Length:689
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA polymerase epsilon catalytic subunit A
Chain IDs:M (auth: G)
Chain Length:2222
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication complex GINS protein PSF1
Chain IDs:N (auth: H)
Chain Length:208
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication complex GINS protein PSF2
Chain IDs:O (auth: I)
Chain Length:213
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Unwinding of a eukaryotic origin of replication visualized by cryo-EM.
Nat.Struct.Mol.Biol. 31 1265 1276 (2024)
PMID: 38760633 DOI: 10.1038/s41594-024-01280-z

Abstact

To prevent detrimental chromosome re-replication, DNA loading of a double hexamer of the minichromosome maintenance (MCM) replicative helicase is temporally separated from DNA unwinding. Upon S-phase transition in yeast, DNA unwinding is achieved in two steps: limited opening of the double helix and topological separation of the two DNA strands. First, Cdc45, GINS and Polε engage MCM to assemble a double CMGE with two partially separated hexamers that nucleate DNA melting. In the second step, triggered by Mcm10, two CMGEs separate completely, eject the lagging-strand template and cross paths. To understand Mcm10 during helicase activation, we used biochemical reconstitution with cryogenic electron microscopy. We found that Mcm10 splits the double CMGE by engaging the N-terminal homo-dimerization face of MCM. To eject the lagging strand, DNA unwinding is started from the N-terminal side of MCM while the hexamer channel becomes too narrow to harbor duplex DNA.

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