8P4X image
Deposition Date 2023-05-23
Release Date 2023-11-08
Last Version Date 2025-07-02
Entry Detail
PDB ID:
8P4X
Keywords:
Title:
FAD_ox bound dark state structure of PdLCry
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Putative light-receptive cryptochrome (Fragment)
Chain IDs:A, B
Chain Length:565
Number of Molecules:2
Biological Source:Platynereis dumerilii
Primary Citation
A marine cryptochrome with an inverse photo-oligomerization mechanism.
Nat Commun 14 6918 6918 (2023)
PMID: 37903809 DOI: 10.1038/s41467-023-42708-2

Abstact

Cryptochromes (CRYs) are a structurally conserved but functionally diverse family of proteins that can confer unique sensory properties to organisms. In the marine bristle worm Platynereis dumerilii, its light receptive cryptochrome L-CRY (PdLCry) allows the animal to discriminate between sunlight and moonlight, an important requirement for synchronizing its lunar cycle-dependent mass spawning. Using cryo-electron microscopy, we show that in the dark, PdLCry adopts a dimer arrangement observed neither in plant nor insect CRYs. Intense illumination disassembles the dimer into monomers. Structural and functional data suggest a mechanistic coupling between the light-sensing flavin adenine dinucleotide chromophore, the dimer interface, and the C-terminal tail helix, with a likely involvement of the phosphate binding loop. Taken together, our work establishes PdLCry as a CRY protein with inverse photo-oligomerization with respect to plant CRYs, and provides molecular insights into how this protein might help discriminating the different light intensities associated with sunlight and moonlight.

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