8P26 image
Deposition Date 2023-05-15
Release Date 2023-06-28
Last Version Date 2023-10-04
Entry Detail
PDB ID:
8P26
Title:
Crystal structure of Arabidopsis thaliana PAXX
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 21 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Gene (Uniprot):MBM17.11
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:238
Number of Molecules:10
Biological Source:Arabidopsis thaliana
Primary Citation
Plant PAXX has an XLF-like function and stimulates DNA end joining by the Ku-DNA ligase IV/XRCC4 complex.
Plant J. 116 58 68 (2023)
PMID: 37340932 DOI: 10.1111/tpj.16359

Abstact

Non-homologous end joining (NHEJ) plays a major role in repairing DNA double-strand breaks and is key to genome stability and editing. The minimal core NHEJ proteins, namely Ku70, Ku80, DNA ligase IV and XRCC4, are conserved, but other factors vary in different eukaryote groups. In plants, the only known NHEJ proteins are the core factors, while the molecular mechanism of plant NHEJ remains unclear. Here, we report a previously unidentified plant ortholog of PAXX, the crystal structure of which showed a similar fold to human 'PAXX'. However, plant PAXX has similar molecular functions to human XLF, by directly interacting with Ku70/80 and XRCC4. This suggests that plant PAXX combines the roles of mammalian PAXX and XLF and that these functions merged into a single protein during evolution. This is consistent with a redundant function of PAXX and XLF in mammals.

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Primary Citation of related structures
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